##read in cell line metabolism profiling
dat_metab<-as.data.frame(read.table("dat/CCLE_metabolomics_20190502.csv",sep=",",check.names = FALSE,header=T,row.names=1,stringsAsFactors=F))
dat_metab = dat_metab[,!grepl("DepMap_ID",colnames(dat_metab))]
#head(dat_metab)
##read in cell line annotation
anno<-as.data.frame(read.csv("dat/Cell_lines_annotations_v6.csv", header = TRUE, sep = ",", dec = ".",stringsAsFactors=FALSE))
row.names(anno)<-anno[,"CCLE_ID"]
#colnames(anno)
target_features=c("Original.Source.of.Cell.Line","growth_properties","SampleType","inferred_ethnicity","Age","Pathology","mutRate","tcga_code",'Cell_culture_media','FBS.','Doubling_time_hr','GI')
anno<-anno[,target_features]
#head(anno)
#summary(anno)
#table(anno$Pathology)
#table(anno$Cell_culture_media)
#merge data
dat<-merge(anno,dat_metab,by="row.names")
#dim(dat)
row.names(dat) <- dat[,1]
dat<-dat[,-1]
##PCA plot with all 928 samples
#library(ggfortify)
#autoplot(prcomp(dat[,-(1:length(target_features))]),data=dat,colour='growth_properties',na.action=na.omit,size=1,label=FALSE,label.size=1,center = TRUE, scale = TRUE)
#autoplot(prcomp(dat[,-(1:length(target_features))]),data=dat,colour='SampleType',na.action=na.omit,size=1,label=FALSE,label.size=1,center = TRUE, scale = TRUE)
##keep adherent samples only
dat<-dat[!rownames(dat) %in% c("OV90_OVARY","TOV112D_OVARY","TOV21G_OVARY","NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE","CMK115_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE","EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE","HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE","NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE","P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE"),]
#dat=subset(dat,growth_properties == "Adherent")
#table(dat$Cell_culture_media)
head(dat)
#write.table(dat_metab,file="CCLE_metabolism_filtered.txt",quote=F,row.names=T)
| Original.Source.of.Cell.Line | growth_properties | SampleType | inferred_ethnicity | Age | Pathology | mutRate | tcga_code | Cell_culture_media | FBS. | ⋯ | C56:8-TAG | C56:7-TAG | C56:6-TAG | C56:5-TAG | C56:4-TAG | C56:3-TAG | C56:2-TAG | C58:8-TAG | C58:7-TAG | C58:6-TAG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| <chr> | <chr> | <chr> | <chr> | <dbl> | <chr> | <dbl> | <chr> | <chr> | <int> | ⋯ | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | |
| 22RV1_PROSTATE | ATCC | Adherent | tissue_cell | Caucasian | NA | primary | 539.8309 | PRAD | RPMI_1640 | 10 | ⋯ | 5.584860 | 5.603514 | 5.639345 | 5.533748 | 5.542003 | 5.774731 | 5.893237 | 5.527566 | 5.318848 | 5.504180 |
| 2313287_STOMACH | DSMZ | #N/A | tissue_cell | Caucasian | 72 | primary | 521.3553 | STAD | RPMI_1640 | 10 | ⋯ | 5.711453 | 5.577360 | 5.470305 | 5.372320 | 5.429422 | 5.675802 | 5.551614 | 5.397496 | 5.198908 | 5.164596 |
| 253J_URINARY_TRACT | KCLB | Adherent | tissue_cell | Caucasian | NA | primary | 137.8568 | BLCA | DMEM | 10 | ⋯ | 5.886677 | 5.452591 | 5.483652 | 5.388520 | 5.458914 | 5.992170 | 5.853294 | 5.277908 | 5.309389 | 5.198101 |
| 253JBV_URINARY_TRACT | #N/A | tissue_cell | Caucasian | NA | primary | 145.6658 | BLCA | DMEM | 10 | ⋯ | 5.775299 | 5.833909 | 5.704365 | 5.447852 | 5.629266 | 6.114947 | 6.258733 | 5.667134 | 5.520397 | 5.545598 | |
| 42MGBA_CENTRAL_NERVOUS_SYSTEM | DSMZ | Adherent | tissue_cell | Caucasian | 63 | primary | 107.0509 | GBM | RPMI:EMEM=1:1 | 20 | ⋯ | 5.306641 | 6.034166 | 5.297685 | 5.279306 | 5.212266 | 4.960074 | 5.098560 | 5.714910 | 5.662014 | 5.337271 |
| 5637_URINARY_TRACT | Adherent | tissue_cell | Asian | 68 | primary | 278.0196 | BLCA | RPMI_1640 | 10 | ⋯ | 4.858652 | 5.611724 | 5.631080 | 5.212689 | 5.327245 | 5.805960 | 6.275076 | 5.520683 | 5.332394 | 5.516114 |
1)Read in RNA data
2)data processing: CCDS,missing data,log,quantile normalization
3)merge data
dat_rna<-as.data.frame(read.table("dat/CCLE_RNAseq_rsem_genes_tpm_20180929.txt",sep="\t",na.strings = c("0"),check.names = FALSE,header=T,row.names=1,stringsAsFactors=F))
dat_rna = t(dat_rna[,!grepl("transcript_ids",colnames(dat_rna))])
#remove ENSEMBL ID version
colnames(dat_rna) <- gsub(".[0-9]*$", "", colnames(dat_rna))
#head(dat_rna)
dim(dat_rna)
#save(dat_rna,file="tmp1.RData")
#CCDS(coding region) ENSEMBL ID to Gene symbol, 18K genes left
name<-as.data.frame(read.table("dat/HGNC_ENSEMBL_Symbol.txt",sep="\t",check.names = FALSE,header=F,stringsAsFactors=F))
#head(name)
tmp=merge(t(dat_rna),name[,c(1,2)],by.x="row.names",by.y="V2")
row.names(tmp)=tmp$V1
tmp=tmp[,!colnames(tmp) %in% c("Row.names","V1")]
dat_rna=as.data.frame(t(tmp))
dat_rna=dat_rna[,-1]
#head(dat_rna)
dim(dat_rna)
#keep gene with at least 10% valued value, 18k genes -> 13K genes left.
f<-function(x) sum(x==0)
d<-as.data.frame(apply(dat_rna,2,f))
d$geneID=row.names(d)
#head(d)
dat_rna=dat_rna[,row.names(d[d[,1]<as.numeric(as.character(dim(dat_rna)[1]))*0.1,])]
dat_rna=dat_rna[,-1]
#head(dat_rna)
dim(dat_rna)
#save(dat_rna,file="tmp2.RData")
#log10
library(dplyr)
dat_rna=as.data.frame(sweep(data.matrix(dat_rna),1,0.000001,FUN = "+")) #log(X+1)
dat_rna %>% mutate_each(funs(log10)) -> tmp
row.names(tmp)=row.names(dat_rna)
dat_rna=round(tmp,3)
tmp=""
#head(dat_rna)
#dim(dat_rna)
#quantile normalization
library(preprocessCore)
tmp=t(dat_rna)
#head(tmp)
#check sample distribution before normalization
#boxplot(tmp[,sample(1:ncol(tmp), 30)])
tmp=normalize.quantiles(tmp)
#check sample distribution after normalization
#boxplot(tmp[,sample(1:ncol(tmp), 30)])
tmp=t(tmp)
row.names(tmp)=row.names(dat_rna)
colnames(tmp)=colnames(dat_rna)
dat_rna=as.data.frame(tmp)
tmp=NULL
#head(dat_rna)
#merge with metabolites data and gain 454 shared samples
dat_m_rna=merge(dat,dat_rna,by="row.names")
row.names(dat_m_rna) <- dat_m_rna[,1]
dat_m_rna<-dat_m_rna[,-1]
dim(dat_m_rna)
head(dat_m_rna)
55 media components + 12 clinical info + 225 metabolites + 13403 genes - 1 "Cell_culture_media" =13964
options(scipen = 200)
media<-as.data.frame(read.csv("dat/cell_media.csv",check.names = FALSE,header=T,stringsAsFactors=F))
#head(media)
##merge media components with metabolites,clinical info and RNA
dat_merge=dat_m_rna
dat_merge$sample=row.names(dat_merge)
dat_merge=as.data.frame(merge(media,dat_merge,by="Cell_culture_media",all.y=T))
row.names(dat_merge)=dat_merge$sample
dat_merge<-dat_merge[,!colnames(dat_merge) %in% c("Cell_culture_media","sample")]
head(dat_merge)
dim(dat_merge)
#save
#save(dat_merge,dat_metab,dat_rna,dat_m_rna,dat,target_features,file="dat/CLsample_454_metabolites&rna.RData")
| Biotin(VB7) | CaCl2 | Choline Chloride | CuSO4-5H2O | D-Calcium pantothenate | D-Glucose(D+ Galactose) | FeSO4-7H2O | Folic Acid | Glutathione (reduced) | Glycine | ⋯ | FMC1-LUC7L2 | ZNF559-ZNF177 | NCBP2AS2 | SRXN1 | GTF2H5 | NUDT3 | KMT2B | ATP6V1FNB | C2orf15 | SNURF | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | ⋯ | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | |
| NH6_AUTONOMIC_GANGLIA | 0.1 | 200 | 1 | 0 | 1 | 0 | 0.000 | 1 | 0 | 50 | ⋯ | 1.6080334 | 0.44720216 | 1.172839 | 1.354311 | 0.4024769 | 1.4197115 | 0.7841683 | -0.1267841021 | -0.2443631 | 2.187312 |
| CAL12T_LUNG | 0.0 | 200 | 4 | 0 | 4 | 4500 | 0.069 | 4 | 0 | 30 | ⋯ | 1.2766953 | -0.05280373 | 1.608477 | 2.477895 | 0.6184818 | 0.8313312 | 0.5654661 | -0.0004661433 | 0.6698371 | 1.555932 |
| 59M_OVARY | 0.0 | 200 | 4 | 0 | 4 | 4500 | 0.069 | 4 | 0 | 30 | ⋯ | 0.9103366 | -0.68466340 | 1.317080 | 1.705878 | 1.1485280 | 0.9793925 | 0.7136693 | -1.5265897939 | -0.9259578 | 1.833628 |
| CAL29_URINARY_TRACT | 0.0 | 200 | 4 | 0 | 4 | 4500 | 0.069 | 4 | 0 | 30 | ⋯ | 1.1299794 | -0.16321492 | 1.360258 | 1.532204 | 0.5498322 | 0.7536742 | 0.6361187 | -0.7896889107 | 0.5707988 | 1.600388 |
| CAL851_BREAST | 0.0 | 200 | 4 | 0 | 4 | 4500 | 0.069 | 4 | 0 | 30 | ⋯ | 1.0941914 | -0.56353484 | 1.390372 | 1.731245 | 0.5810677 | 0.9566771 | 0.3310250 | -0.2582904809 | 0.4592895 | 1.544881 |
| KMRC1_KIDNEY | 0.0 | 200 | 4 | 0 | 4 | 4500 | 0.069 | 4 | 0 | 30 | ⋯ | 1.3152787 | -0.14759568 | 1.410445 | 1.716972 | 1.0661570 | 0.8716011 | -0.2416065 | -0.8191550540 | -0.7706938 | 1.707431 |
dat_merge:454 samples (55 media components + 12 clinical info + 225 metabolites + 13403 genes - 1 "Cell_culture_media")
dat_metab:928 CCLE metabolism profiling
dat_rna:1019 processed CCLE RNA profiling
dat_m_rna:454 samples (12 clinical info + 225 metabolites + 13403 genes)
dat: 460 adherent samples * (12 clinical info + 225 metabolites)
target_features: 12 clinical info, c("Original.Source.of.Cell.Line","growth_properties","SampleType","inferred_ethnicity","Age","Pathology","mutRate","tcga_code",'Cell_culture_media','FBS.','Doubling_time_hr','GI')
load(file="dat/CLsample_454_metabolites&rna.RData")
##bar plot
library(ggplot2)
library(ggpubr)
dat_m_rna$tcga_code[is.na(dat_m_rna$tcga_code)] <- "UNABLE TO CLASSIFY"
#write.csv(dat_m_rna,file="doc/00MergeData.csv",quote=F,row.names=T)
p<-ggplot(dat_m_rna, aes(x = tcga_code, fill = Cell_culture_media))
p=p + geom_bar()+theme_bw()+theme(text = element_text(size = 15),axis.text.x = element_text(angle = 45, hjust = 1, vjust = 1,colour = "black", size = 10))
#p=p+coord_flip()+theme(panel.grid.major=element_blank(),
# panel.grid.minor=element_blank()
# axis.text=element_text(size=15),
# axis.title=element_text(size=15))
p
####
#pdf(file="Fig1a.pdf")
#p
#dev.off()
#heatmap
library(pheatmap)
#M' calss
annotation_row = as.data.frame(read.csv("dat/Metabolite_classification.csv",check.names = FALSE,header=T))
annotation_row=data.frame(annotation_row$MetabClass)
row.names(annotation_row) = colnames(dat_metab)
#colnames(annotation_row)="MetabClass"
#head(annotation_row)
#show_col(hue_pal()(25))
#colors
colors=list(Cell_culture_media=c(AMEM="#F8766D", DMEM="#E88526",'DMEM:F12=1:1'="#D39200",
'DMEM:RPMI=2:1'="#B79F00",EMEM="#93AA00", 'EMEM:F12=1:1'="#5EB300",
F10="#00BA38", F12="#00BF74",F12K="#00C19F", IMDM="#00BFC4",
'Leibovitzs_L-15'="#00B9E3", 'McCoys_5A'="#00ADFA",MEM="#619CFF",
RPMI_1640="#AE87FF",'RPMI:EMEM=1:1'="#DB72FB", 'RPMI:F12=1:1'="#F564E3",
'RPMI:MEM=1:1'="#FF61C3", Williams_E_Medium="#FF699C",'NA'="Dark Grey"),
annotation_row.MetabClass = c(other = "grey",lipid = "#66A61E",amino_acid = "#7570B3",nucleotide="yellow",sugar="red"))
p2=pheatmap(t(dat_metab[row.names(dat_m_rna[order(dat_m_rna$tcga_code),]),]),
color = colorRampPalette(c("navy", "white", "firebrick3"))(50),
scale="row",annotation_col = dat_m_rna[,c("Cell_culture_media","tcga_code")],
annotation_row=annotation_row,show_rownames = F,show_colnames = F,cluster_col = FALSE,
cluster_row = TRUE,fontsize=12,annotation_colors = colors)
pdf(file="Fig1b.pdf")
p2
dev.off()
##check SD for metabolites
#calculate CV= SD/mean, see variant amoung group
#d=as.data.frame(apply(dat[,-(1:length(target_features))],2,sd))
d=as.data.frame(apply(dat[row.names(dat_m_rna),-(1:length(target_features))],2,sd)/apply(dat[row.names(dat_m_rna),-(1:length(target_features))],2,mean))
d$metab=row.names(d)
dd=as.data.frame(d[order(d[,1],decreasing=TRUE),])
colnames(dd)=c("CV","metabolite")
dd$CV=as.numeric(as.character(dd$CV))
#write.csv(dd,file="doc/01CV.csv",quote=F,row.names=T)
dd$index=c(1:225)
head(dd)
library(ggrepel)
p=ggplot(dd) +
geom_point(aes(index,CV), color = 'black') +
geom_text_repel(aes(index,CV, label = metabolite),color = 'red',size=8) + theme_classic(base_size = 30)
p
#pdf(file="Fig1c.pdf")
#p
#dev.off()
#correlation heatmap plot
library(corrplot)
dat_s=dat[row.names(dat_m_rna),-c(1:length(target_features))]
dim(dat_s)
#head(dat_s)
matrix <- cor(dat_s,method="pearson",use="complete.obs")
corrplot(matrix, method="color",type = "lower", order = "original", tl.col = "black",cl.cex=1,tl.cex=0.1)
#summary(matrix[matrix<1])
#pdf(file="Fig1d.pdf")
#corrplot(matrix, method="color",type = "lower", order = "original", tl.col = "black",cl.cex=1,tl.cex=0.1)
#dev.off()
Warning message: “package ‘ggplot2’ was built under R version 3.6.3”
| CV | metabolite | index | |
|---|---|---|---|
| <dbl> | <chr> | <int> | |
| 1-methylnicotinamide | 0.2018887 | 1-methylnicotinamide | 1 |
| taurodeoxycholate/taurochenodeoxycholate | 0.1654351 | taurodeoxycholate/taurochenodeoxycholate | 2 |
| acetylcholine | 0.1573526 | acetylcholine | 3 |
| 2-deoxycytidine | 0.1131291 | 2-deoxycytidine | 4 |
| phosphocreatine | 0.1080448 | phosphocreatine | 5 |
| palmitoylcarnitine | 0.1071596 | palmitoylcarnitine | 6 |
Warning message: “ggrepel: 221 unlabeled data points (too many overlaps). Consider increasing max.overlaps”
corrplot 0.89 loaded
dat_rf=cbind(dat[rownames(dat_merge),c("tcga_code","Cell_culture_media")],dat[rownames(dat_merge),13:ncol(dat)])
dat_rf=na.omit(dat_rf)
#head(dat_rf)
library(glmnet)
library(broom)
options(scipen = 200)
options(digits=5)
dd=NULL
for (i in 3:(ncol(dat_rf)-1)) {
y_name=colnames(dat_rf)[i]
y=as.numeric(as.character(dat_rf[,y_name]))
lr<-lapply((i+1):ncol(dat_rf),function(j){
x_name=colnames(dat_rf)[j]
x=dat_rf[,c(1,2,j)]
tmp=cbind(y,x)
fit=lm(y~.,data=tmp)
coef=as.data.frame(summary(fit)$coef[,"Estimate"])
coefb=signif(coef[nrow(coef),],3)
pvalue=signif(anova(fit)[3,5],3) #univariant, pvalue at pos 2
ar2=signif(summary(fit)$adj.r.square,3)
re<-c(y_name,x_name,coefb,ar2,pvalue)
return(re)
} )
d<-do.call(rbind, lr)
d<-as.data.frame(d)
colnames(d)<-c("Predicted_Metabolites","metabolite B","metabolite B coef","adjust_R2","pvalue")
dd=rbind(dd,d)
}
#dd<-dd[order(dd[,3],decreasing=TRUE),]
head(dd)
write.csv(dd,file = "metabolites_lm_correlation.csv",quote=F,row.names=F)
Loading required package: Matrix Loaded glmnet 4.1-1
| Predicted_Metabolites | metabolite B | metabolite B coef | adjust_R2 | pvalue | |
|---|---|---|---|---|---|
| <fct> | <fct> | <fct> | <fct> | <fct> | |
| 1 | 2-aminoadipate | 3-phosphoglycerate | 0.0256 | 0.226 | 0.59 |
| 2 | 2-aminoadipate | alpha-glycerophosphate | -0.00443 | 0.226 | 0.891 |
| 3 | 2-aminoadipate | 4-pyridoxate | -0.0135 | 0.226 | 0.765 |
| 4 | 2-aminoadipate | aconitate | 0.0203 | 0.226 | 0.694 |
| 5 | 2-aminoadipate | adenine | 0.0481 | 0.229 | 0.227 |
| 6 | 2-aminoadipate | adipate | 0.0344 | 0.226 | 0.67 |
library(ggfortify)
#dat_pca=dat[dat[, "type"] == "lung_small_cell",]
dat_pca=dat[rownames(dat) %in% rownames(dat_merge),]
dat_pca$tcga_code[is.na(dat_pca$tcga_code)] <- "UNABLE TO CLASSIFY"
#head(dat_pca)
#dim(dat_pca)
#table(dat_pca$inferred_ethnicity)
# apply PCA - scale. = TRUE is highly advisable, but default is FALSE.
out_pca <- prcomp(dat_pca[,-c(1:length(target_features))],center = TRUE, scale = TRUE)
#plot(out_pca,type="l")
#plot(out_pca$x[,1],out_pca$x[,2])
pdf(file="median_FBS.pdf")
autoplot(prcomp(dat_pca[,-(1:length(target_features))]),data=dat_pca,colour='tcga_code',size=2,label=FALSE,label.size=1,center = TRUE, scale = TRUE) +theme_bw() + theme(panel.grid=element_blank())
dev.off()
#pdf(file="median_FBS2.pdf")
#autoplot(prcomp(dat_pca[,-(1:length(target_features))]),data=dat_pca,colour='Cell_culture_media',size=2,label=FALSE,label.size=1,center = TRUE, scale = TRUE) +theme_bw() + theme(panel.grid=element_blank())
#dev.off()
#pdf(file="median_FBS3.pdf")
#autoplot(prcomp(dat_pca[,-(1:length(target_features))]),data=dat_pca,size=0.1,label=TRUE,label.size=1,center = TRUE, scale = TRUE) +theme_bw() + theme(panel.grid=element_blank())
#dev.off()
#png(file="median_FBS3.png",width=1200,height=1000)
#autoplot(prcomp(dat[,-(1:length(target_features))]),data=dat,colour='growth_properties',size=1,label=FALSE,label.size=1,center = TRUE, scale = TRUE)
#dev.off()
Basically they are telling us to stratify samples based on metabolites levels (i.e. for a given metabolite pick samples from the top and bottom quartile) and then use these groups to perform a GSEA analysis using the fold change of genes between the high and low group for each metabolite and then ask whether any metabolic pathways are enriched.
#head(dat_metab)
#k=187
#colnames(dat_m_rna)[k]
k="taurocholate"
Q1=quantile(dat_m_rna[,k],0.25)[[1]] #metabolites 13-237
Q3=quantile(dat_m_rna[,k],0.75)[[1]]
dat_Q1=dat_m_rna[dat_m_rna[,k]<=Q1,]
dat_Q1_gene=dat_m_rna[row.names(dat_Q1),colnames(dat_rna)]
#dim(dat_Q1_gene)
dat_Q3=dat_m_rna[dat_m_rna[,k]>=Q3,]
dat_Q3_gene=dat_m_rna[row.names(dat_Q3),colnames(dat_rna)]
#dim(dat_Q3_gene)
FC=rep(0,ncol(dat_rna))
for(i in 1:ncol(dat_rna)){
FC[i]=signif(mean(dat_Q1_gene[,i])/mean(dat_Q3_gene[,i]),5)
}
#logFC=log(FC,base=2)
head(FC)
summary(FC)
d=data.frame(SYMBOL=colnames(dat_rna),FC=FC)
head(d)
#d=na.omit(d)
#write.table(d,file="FC.rnk",sep="\t",quote=F,row.names=F,col.names=F)
Min. 1st Qu. Median Mean 3rd Qu. Max. -259.9400 0.9741 0.9989 0.9726 1.0233 50.5320
| SYMBOL | FC | |
|---|---|---|
| <fct> | <dbl> | |
| 1 | SCYL3 | 0.96662 |
| 2 | C1orf112 | 0.95732 |
| 3 | CFH | 1.07440 |
| 4 | FUCA2 | 1.05960 |
| 5 | GCLC | 1.04770 |
| 6 | NFYA | 0.98318 |
#GSEA by R
#https://yanzhongsino.github.io/2021/12/13/bioinfo_GSEA_clusterProfiler/
library(clusterProfiler)
dd<-bitr(d$SYMBOL,fromType="SYMBOL",toType="ENTREZID",OrgDb="org.Hs.eg.db")
#dd[duplicated(dd$SYMBOL),] #check duplicated gene SYMBOL
#dd=subset(dd,SYMBOL!="TEC" & SYMBOL!="MEMO1") #duplicated gene SYMBOL
dd=merge(d,dd,by="SYMBOL",all.x=TRUE)
dd=dd[order(dd$FC,decreasing=T),]
#head(dd)
dim(dd)
gene_fc=dd$FC
names(gene_fc)=dd$ENTREZID
#head(gene_fc)
library(clusterProfiler)
library(enrichplot)
KEGG=gseMKEGG(geneList= gene_fc,organism= "hsa",pvalueCutoff = 1,minGSSize= 10,maxGSSize = 500)
#subset(as.data.frame(KEGG),p.adjust<0.1)
sort_KEGG=as.data.frame(KEGG)
sort_KEGG=sort_KEGG[order(sort_KEGG$enrichmentScore,decreasing=T),]
head(sort_KEGG)
#row.names(sort_KEGG)
#p=gseaplot2(KEGG,c("M00099","M00094","M00872","M00130"),pvalue_table=TRUE,ES_geom="line") #"M00872","M00130"
#pdf(file="gsea.pdf")
#p
#dev.off()
'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...”
preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (46.73% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done...
| ID | Description | setSize | enrichmentScore | NES | pvalue | p.adjust | qvalues | rank | leading_edge | core_enrichment | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| <chr> | <chr> | <int> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <chr> | <chr> | |
| M00094 | M00094 | Ceramide biosynthesis | 11 | 0.8263627 | 2.875071 | 0.004777070 | 0.1490964 | 0.1474318 | 2 | tags=9%, list=0%, signal=9% | 55304 |
| M00099 | M00099 | Sphingosine biosynthesis | 14 | 0.7773329 | 2.968474 | 0.009036145 | 0.1490964 | 0.1474318 | 292 | tags=14%, list=2%, signal=14% | 55304/56624 |
| M00036 | M00036 | Leucine degradation, leucine => acetoacetate + acetyl-CoA | 12 | 0.4659721 | 1.655112 | 0.065810594 | 0.5016660 | 0.4960652 | 6093 | tags=92%, list=45%, signal=50% | 586/587/64087/3712/1629/549/594/56922/1738/3155/593 |
| M00011 | M00011 | Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate | 14 | 0.4134120 | 1.578735 | 0.088855422 | 0.5016660 | 0.4960652 | 7869 | tags=100%, list=59%, signal=41% | 55753/8803/8801/8802/1743/4967/1738/6392/4191/6391/2271/6389/6390/4190 |
| M00147 | M00147 | NADH dehydrogenase (ubiquinone) 1 beta subcomplex | 13 | 0.3973268 | 1.472478 | 0.122887865 | 0.5069124 | 0.5012531 | 8084 | tags=100%, list=60%, signal=40% | 4715/4718/4716/4717/4710/4711/4712/4709/4707/4714/4708/54539/4713 |
| M00154 | M00154 | Cytochrome c oxidase | 16 | 0.3884532 | 1.544831 | 0.088757396 | 0.5016660 | 0.4960652 | 8204 | tags=100%, list=61%, signal=39% | 125965/1352/1337/1345/1327/1350/1329/1340/1353/9377/1347/1351/9167/10063/1355/1349 |
#head(dat_metab)
## calculate all GSEA
gsea_result=NULL
library(clusterProfiler)
for(k in 13:ncol(dat_metab)){
#for(k in 13:15){
Q1=quantile(dat_m_rna[,k],0.25)[[1]] #metabolites 13-237
Q3=quantile(dat_m_rna[,k],0.75)[[1]]
dat_Q1=dat_m_rna[dat_m_rna[,k]<=Q1,]
dat_Q1_gene=dat_m_rna[row.names(dat_Q1),colnames(dat_rna)]
#dim(dat_Q1_gene)
dat_Q3=dat_m_rna[dat_m_rna[,k]>=Q3,]
dat_Q3_gene=dat_m_rna[row.names(dat_Q3),colnames(dat_rna)]
#dim(dat_Q3_gene)
#get FC
FC=rep(0,ncol(dat_rna))
for(i in 1:ncol(dat_rna)){
FC[i]=signif(mean(dat_Q1_gene[,i])/mean(dat_Q3_gene[,i]),5)
}
#logFC=log(FC,base=2)
d=data.frame(SYMBOL=colnames(dat_rna),FC=FC)
#calculate GSEA
dd<-bitr(d$SYMBOL,fromType="SYMBOL",toType="ENTREZID",OrgDb="org.Hs.eg.db")
#dd[duplicated(dd$SYMBOL),] #check duplicated gene SYMBOL
#dd=subset(dd,SYMBOL!="TEC" & SYMBOL!="MEMO1") #duplicated gene SYMBOL
dd=merge(d,dd,by="SYMBOL",all.x=TRUE)
dd=dd[order(dd$FC,decreasing=T),]
gene_fc=dd$FC
names(gene_fc)=dd$ENTREZID
head(gene_fc)
KEGG=as.data.frame(gseMKEGG(geneList= gene_fc,organism= "hsa",pvalueCutoff = 1,minGSSize= 10,maxGSSize = 500))
KEGG$grouped_Metabolite=colnames(dat_m_rna)[k]
gsea_result=rbind(gsea_result,KEGG)
}
#d=na.omit(d)
#write.table(gsea_result,file="gseMKEGG_min10.txt",sep="\t",quote=F,row.names=F,col.names=F)
subset(gsea_result,p.adjust<0.05)
'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (33.55% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (41.73% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (34.86% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (46.66% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (42.22% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (43.19% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (45.22% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (39.48% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (34.06% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (43.13% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (40.19% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (39.6% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (31.76% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (31.34% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (37.43% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (38.49% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (42.65% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (40.68% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (43.02% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (43.84% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (41.92% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (39.39% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (38.68% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (39.85% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (34.23% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (47.15% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (46.79% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (37.37% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (45.34% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (36.75% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (40.26% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (43.19% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (39.32% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (40.13% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (44.67% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (33.67% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (41.72% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (40.1% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (39.9% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (45.06% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (42.86% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (44.16% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (34.14% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (38.52% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (42.84% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (44.89% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (43.29% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (44.78% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (46.73% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (46.52% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (46.06% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (35.79% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (42.76% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (37.88% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (41.08% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (37.64% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (44% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (39.17% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (43.22% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (39.46% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (42.07% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (44.14% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (43.48% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (44.1% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (32.76% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (43.56% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (43.66% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (41.75% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (45.57% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (41.63% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (44.22% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (41.88% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (42.01% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (44.06% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (44.05% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (43.05% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (40.33% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (43.72% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (47.74% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (41.95% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (40.3% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (47.18% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (41.86% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (38.26% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (46.36% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (45.92% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done... 'select()' returned 1:many mapping between keys and columns Warning message in bitr(d$SYMBOL, fromType = "SYMBOL", toType = "ENTREZID", OrgDb = "org.Hs.eg.db"): “0.43% of input gene IDs are fail to map...” preparing geneSet collections... GSEA analysis... Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are ties in the preranked stats (40.81% of the list). The order of those tied genes will be arbitrary, which may produce unexpected results.” Warning message in fgsea(pathways = geneSets, stats = geneList, nperm = nPerm, minSize = minGSSize, : “There are duplicate gene names, fgsea may produce unexpected results” leading edge analysis... done...
media
media<-as.data.frame(read.csv("dat/cell_media.csv",check.names = FALSE,header=T,stringsAsFactors=F))
dat_cor<-dat_merge[,colnames(dat_merge) %in% c(colnames(media)[-1])] #get media + target_features
dat_cor=cbind(dat_cor,dat_merge[,c("inferred_ethnicity","Age","Pathology","mutRate","tcga_code","Doubling_time_hr")])
#colnames(dat_cor)
dim(dat_cor)
#dat_cor=na.omit(dat_cor)
dat_cor[is.na(dat_cor)] <- 0
#dim(dat_cor)
head(dat_cor)
##check Multicollinearity
library(car)
y_name=colnames(dat_merge)[26] #randomly select one metabolite
y=dat_merge[row.names(dat_cor),y_name]
sort(vif(lm(y~.,dat_cor[,c(1:10)])),de=T) #randomly check 10 features
| Biotin(VB7) | CaCl2 | Choline Chloride | CuSO4-5H2O | D-Calcium pantothenate | D-Glucose(D+ Galactose) | FeSO4-7H2O | Folic Acid | Glutathione (reduced) | Glycine | ⋯ | Thiamine hydrochloride | Thymidine | Vitamin B12 | ZnSO4-7H2O | inferred_ethnicity | Age | Pathology | mutRate | tcga_code | Doubling_time_hr | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | ⋯ | <dbl> | <dbl> | <dbl> | <dbl> | <chr> | <dbl> | <chr> | <dbl> | <chr> | <dbl> | |
| NH6_AUTONOMIC_GANGLIA | 0.1 | 200 | 1 | 0 | 1 | 0 | 0.000 | 1 | 0 | 50 | ⋯ | 1 | 0 | 1.36 | 0 | Asian | 0.75 | primary | 115.608 | NB | 0.000 |
| CAL12T_LUNG | 0.0 | 200 | 4 | 0 | 4 | 4500 | 0.069 | 4 | 0 | 30 | ⋯ | 4 | 0 | 0.00 | 0 | Caucasian | 0.00 | primary | 208.560 | UNABLE TO CLASSIFY | 34.900 |
| 59M_OVARY | 0.0 | 200 | 4 | 0 | 4 | 4500 | 0.069 | 4 | 0 | 30 | ⋯ | 4 | 0 | 0.00 | 0 | Caucasian | 0.00 | metastasis | 110.612 | OV | 0.000 |
| CAL29_URINARY_TRACT | 0.0 | 200 | 4 | 0 | 4 | 4500 | 0.069 | 4 | 0 | 30 | ⋯ | 4 | 0 | 0.00 | 0 | Caucasian | 80.00 | primary | 66.738 | BLCA | 34.319 |
| CAL851_BREAST | 0.0 | 200 | 4 | 0 | 4 | 4500 | 0.069 | 4 | 0 | 30 | ⋯ | 4 | 0 | 0.00 | 0 | Caucasian | 35.00 | primary | 176.843 | BRCA | 56.700 |
| KMRC1_KIDNEY | 0.0 | 200 | 4 | 0 | 4 | 4500 | 0.069 | 4 | 0 | 30 | ⋯ | 4 | 0 | 0.00 | 0 | Asian | 0.00 | primary | 204.675 | KIRC | 39.882 |
Loading required package: carData
step lm model train y~media components+ clinical traits, see how much does the media influence the metabolite level
http://www.sthda.com/english/articles/37-model-selection-essentials-in-r/154-stepwise-regression-essentials-in-r/
options(scipen = 200)
options(digits=5)
library(MASS)
library(caret)
selected_features=NULL
r2s=NULL
dd=NULL
predicted_metabolite=NULL
# Set seed for reproducibility
set.seed(1007)
# Set up repeated k-fold cross-validation
train.control <- trainControl(method = "cv", number = 10)
#step lm model train y~media components, see how much does the media influence the metabolite level
for (i in 1:nrow(dat_cor)){
#for (i in 1:2){
y_name=colnames(dat_metab)[i]
y=as.numeric(as.character(dat_merge[row.names(dat_cor),y_name]))
# Train the model
tmp=cbind(y,dat_cor)
step.model <- train(y ~., data = tmp,
method = "leapSeq",
tuneGrid = data.frame(nvmax = 1:10),
trControl = train.control
)
d=as.data.frame(coef(step.model$finalModel, step.model$bestTune[[1]]))
tmp=gsub("`", "", row.names(d))[-1] #remove Intercept
selected_features=append(selected_features,tmp)
r2=as.numeric(as.character(signif(step.model$result[step.model$bestTune[[1]],][[3]],3)))
r2s=append(r2s,r2)
rmse=as.numeric(as.character(signif(step.model$result[step.model$bestTune[[1]],][[2]],3)))
tmp=c(y_name,r2)
dd=rbind(dd,tmp)
if(r2>0.2){predicted_metabolite=append(predicted_metabolite,y_name)}
#output
y_name=gsub("/", "-", y_name)
y_name=paste(y_name,r2,rmse,sep="_")
write.csv(d,file = paste('model_cv_steplm_media/',y_name,'_cv_steplm_media_model.csv',sep=""),quote=F,row.names=T)
}
#check R distribution
#table(selected_features)
#plot(dat_cor$"Folic Acid")
#predicted_metabolite
head(dd)
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “45 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “45 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in nominalTrainWorkflow(x = x, y = y, wts = weights, info = trainInfo, : “There were missing values in resampled performance measures.” Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “44 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “43 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Warning message in leaps.setup(x, y, wt = weights, nbest = nbest, nvmax = nvmax, : “42 linear dependencies found”
Reordering variables and trying again:
Error in data.frame(..., check.names = FALSE): arguments imply differing number of rows: 0, 454
Traceback:
1. cbind(y, dat_cor)
2. cbind(deparse.level, ...)
3. data.frame(..., check.names = FALSE)
4. stop(gettextf("arguments imply differing number of rows: %s",
. paste(unique(nrows), collapse = ", ")), domain = NA)
#predicted_metabolite
dd<-as.data.frame(read.table("doc/Table0_covariate_cv_steplm_media_clinical.txt",sep="\t",check.names = FALSE,header=T,stringsAsFactors=F))
dd=as.data.frame(dd[order(dd[,2],decreasing=TRUE),])
colnames(dd)=c("metabolite","R2")
dd$R2=as.numeric(as.character(dd$R2))
dd$index=c(1:nrow(dd))
#write.csv(dd,file ="tmp.csv",quote=F,row.names=F)
dd[1:5,]
library(ggrepel)
p=ggplot(dd) +
geom_point(aes(index,R2), color = 'black') +
geom_text_repel(aes(index,R2, label = metabolite),color = 'red',size=8) + theme_classic(base_size = 30)
p
pdf(file="Fig2b.pdf")
p
dev.off()
| metabolite | R2 | index | |
|---|---|---|---|
| <chr> | <dbl> | <int> | |
| 1 | taurodeoxycholate/taurochenodeoxycholate | 0.693 | 1 |
| 2 | cis/trans-hydroxyproline | 0.640 | 2 |
| 3 | threonine | 0.625 | 3 |
| 4 | asparagine | 0.531 | 4 |
| 5 | valine | 0.517 | 5 |
Warning message: “ggrepel: 209 unlabeled data points (too many overlaps). Consider increasing max.overlaps” Warning message: “ggrepel: 209 unlabeled data points (too many overlaps). Consider increasing max.overlaps”
we can see:
Biotin(VB7),CaCl2,Choline Chloride,CuSO4-5H2O,D-Calcium pantothenate,D-Glucose(D+ Galactose),FeSO4-7H2O,Folic Acid,Glutathione (reduced),Glycine,HEPES,Hypoxanthine Na,i-Inositol are the major components that change the metabolite level, but did not make a big impact, since most R2 is less then 0.2, means most metabolite level does not influenced by major media componment.
following metabolite may impacted by media components:
'taurocholate''glycodeoxycholate/glycochenodeoxycholate''taurodeoxycholate/taurochenodeoxycholate''glycine''serine''threonine''methionine''asparagine''histidine''arginine''lysine''valine''leucine''isoleucine''phenylalanine''tyrosine''tryptophan''cis/trans-hydroxyproline''ornithine''5-HIAA''thiamine''niacinamide''choline''pyroglutamic-acid''methionine-sulfoxide'
specific LASSO regression model
1)generate trainning set and testing set (460 adherent samples, 7:3)
2)Univariant linear regression model (y ~ gene) to see the relationship betweet each metabolite and gene.
3)Top 5% high R2 genes as features and train lasso regression model for each metabolite. (consider multiconlinearity)
4)test in testing set
#set 70% training set and 30% testing set
nn=0.7 #70% for training set
sub<-sample(1:nrow(dat_m_rna),round(nrow(dat_m_rna)*nn))
length(sub)
dat_s_train=dat_m_rna[sub,]
dat_s_test=dat_m_rna[-sub,]
dim(dat_s_train)
dim(dat_s_test)
head(dat_s_train)
#save
#save(dat_s_train,dat_s_test,file="model/training_set.RData")
| Original.Source.of.Cell.Line | growth_properties | SampleType | inferred_ethnicity | Age | Pathology | mutRate | tcga_code | Cell_culture_media | FBS. | ⋯ | FMC1-LUC7L2 | ZNF559-ZNF177 | NCBP2AS2 | SRXN1 | GTF2H5 | NUDT3 | KMT2B | ATP6V1FNB | C2orf15 | SNURF | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| <chr> | <chr> | <chr> | <chr> | <dbl> | <chr> | <dbl> | <chr> | <chr> | <int> | ⋯ | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | |
| JHOM1_OVARY | RIKEN | Adherent | tissue_cell | Asian | NA | primary | 102.747 | OV | DMEM:F12=1:1 | 10 | ⋯ | 1.0204 | -0.537868 | 1.3054 | 2.2034 | 0.80871 | 0.76496 | 0.41027 | -0.91153 | -1.13383759 | 1.86425 |
| HCC1500_BREAST | ATCC | Adherent | tissue_cell | African_american | 32 | primary | 89.269 | BRCA | RPMI_1640 | 10 | ⋯ | 1.3339 | 0.395801 | 1.6382 | 1.2751 | 0.92633 | 0.92223 | 0.64983 | -0.27079 | 1.17197399 | -0.17584 |
| SNU503_LARGE_INTESTINE | KCLB | Adherent | tissue_cell | Asian | 52 | primary | 164.592 | COAD/READ | RPMI_1640 | 10 | ⋯ | 1.0744 | -0.613796 | 1.7141 | 2.3845 | 0.38063 | 1.07814 | 0.63737 | -0.61380 | 0.27063984 | 1.97257 |
| SKMEL3_SKIN | Adherent | tissue_cell | Caucasian | 42 | metastasis | 108.449 | SKCM | McCoys_5A | 15 | ⋯ | 1.6394 | 0.340579 | 1.4444 | 2.0635 | 0.69535 | 0.91312 | 0.50505 | 0.14109 | -0.33949460 | 1.99450 | |
| T3M10_LUNG | GNF | Adherent | tissue_cell | Asian | 40 | primary | 235.958 | NA | F10 | 10 | ⋯ | 1.3579 | -1.383496 | 1.4237 | 2.0514 | 0.58902 | 1.02535 | 0.40935 | -0.28466 | 0.63699411 | 2.10705 |
| DBTRG05MG_CENTRAL_NERVOUS_SYSTEM | ATCC | Adherent | tissue_cell | Caucasian | 59 | primary | 204.713 | GBM | RPMI_1640 | 10 | ⋯ | 1.2722 | 0.017378 | 1.1869 | 2.0007 | 0.80329 | 0.92600 | 0.26925 | -0.29499 | -0.00069529 | 2.22851 |
#UNIvariant linear model + corvariate
load(file="model/training_set.RData")
library(glmnet)
library(broom)
options(scipen = 200)
options(digits=5)
for (i in 1:ncol(dat_metab)) {
#for (i in 1:3) {
y_name=colnames(dat_metab)[i]
#y_name="x"
y=as.numeric(as.character(dat_s_train[,y_name]))
lr<-lapply(1:ncol(dat_rna),function(i){
x_name=colnames(dat_rna)[i]
x=dat_s_train[,x_name]
tmp=cbind(dat_s_train[,c("tcga_code","Cell_culture_media")],x)
fit=lm(y~.,data=tmp)
pvalue=signif(anova(fit)["x",5],3) #univariant, pvalue at pos 2
ar2=signif(summary(fit)$adj.r.square,3)
re<-c(y_name,x_name,pvalue,ar2)
return(re)
} )
d<-do.call(rbind, lr)
d<-as.data.frame(d)
colnames(d)<-c("Predicted_Metabolites","Gene_symbol","pvalue","adjust_R2")
d<-d[order(d[,4],decreasing=TRUE),]
y_name=gsub("/", "-", y_name)
write.csv(d,file = paste('model/lm_metab_RNA_corvariate_univariant/',y_name,'_rna_c_univariant_model.csv',sep=""),quote=F,row.names=F)
}
#UNIvariant linear model
library(glmnet)
library(broom)
options(scipen = 200)
options(digits=5)
for (i in 1:ncol(dat_metab)) {
#for (i in 1:3) {
y_name=colnames(dat_metab)[i]
#y_name="x"
y=as.numeric(as.character(dat_s_train[,y_name]))
lr<-lapply(1:ncol(dat_rna),function(i){
x_name=colnames(dat_rna)[i]
x=dat_s_train[,x_name]
fit=lm(y~x)
pvalue=signif(anova(fit)["x",5],3) #univariant, pvalue at pos 2
ar2=signif(summary(fit)$adj.r.square,3)
re<-c(y_name,x_name,pvalue,ar2)
return(re)
} )
d<-do.call(rbind, lr)
d<-as.data.frame(d)
colnames(d)<-c("Predicted_Metabolites","Gene_symbol","pvalue","adjust_R2")
d<-d[order(d[,4],decreasing=TRUE),]
y_name=gsub("/", "-", y_name)
write.csv(d,file = paste('model/lm_metab_RNA_univariant/',y_name,'_rna_univariant_model.csv',sep=""),quote=F,row.names=F)
}
#model training and testing
load(file="model/training_set.RData")
library(glmnet)
RMSE = function(y_predicted,y){sqrt(mean((y - y_predicted)^2))}
R2=function(y_predicted,y){
round(1 - sum((y_predicted - y)^2) / sum((y - mean(y))^2),3)
}
seed =1007
rsqs <- NULL
rsqs_test <- NULL
rmses <- NULL
rmses_test <-NULL
d<-c("metabolite","TrainingSet_R2","TestingSet_R2","TraningSet_RMSE","TestingSet_RMSE")
for (i in 1:ncol(dat_metab)){
#y_name="1-methylnicotinamide"
y_name=colnames(dat_metab)[i]
y_name_r=gsub("/", "-", y_name)
##generate x matrix
#get selected gene set
metab_file = paste('model/lm_metab_RNA_corvariate_univariant/',y_name_r,'_rna_c_univariant_model.csv',sep="")
tmp<-as.data.frame(read.table(metab_file,sep=",",check.names = FALSE,header=T,stringsAsFactors=F))
#selected gene with R2 > Q3
cutoff = quantile(tmp[,4],0.9)[[1]] #top 10% gene selected
tmp=subset(tmp,adjust_R2>=cutoff&pvalue<0.05) #protential significant gene
#tmp=subset(tmp,R2>=cutoff) #protential significant gene
#head(tmp)
#dim(tmp)
#hist(tmp[,"adjust_R2"],breaks=50)
#extract geneset
sel_gene=unique(tmp$Gene_symbol)
dat_top_genes=dat_s_train[,colnames(dat_s_train) %in% sel_gene]
x=as.matrix(dat_top_genes)
y=dat_s_train[row.names(x),y_name] #make sure that y and x are in the same order
dat_lasso=cbind(y,x)
lambdas <- 10^seq(2, -2, by = -.1)
#fit = glmnet(x,y,alpha = 1,family = "gaussian",standardize=TRUE)
cv.fit <- cv.glmnet(x=data.matrix(dat_lasso[,-1]),y=data.matrix(dat_lasso[,1]),alpha = 1,family = 'gaussian',standardize=TRUE,grouped=FALSE,nfolds = 10,lambda = lambdas)
#plot(cv.fit)
#coef(cv.fit,s = "lambda.min")
##check trainning set performance
y_predicted <- predict(cv.fit,s=cv.fit$lambda.1se,newx=data.matrix(dat_lasso[,-1]))
##evaluate performance
# R squared
rsq <- R2(y_predicted,y)
rsqs<-append(rsqs,rsq)
rmse <- RMSE(y_predicted,y)
rmses<-append(rmses,rmse)
#rsq
#select features
tmp_coeffs <- coef(cv.fit, s = "lambda.1se")
##output coef as matrix
output_coef=data.frame(name = tmp_coeffs@Dimnames[[1]][tmp_coeffs@i + 1], coefficient = tmp_coeffs@x)
row.names(output_coef)=output_coef$name
select.varialbes = tmp_coeffs@Dimnames[[1]][tmp_coeffs@i + 1]
#length(select.varialbes)
select.v=output_coef[select.varialbes,]
select.v=select.v[order(select.v[,2],decreasing=TRUE),]
#select.v
y_name_r=paste(y_name_r,rsq,sep = "_", collapse = NULL)
##check performance in testing set
dat_top_genes=dat_s_test[,colnames(dat_s_test) %in% sel_gene]
x=as.matrix(dat_top_genes)
y=dat_s_test[row.names(x),y_name]
dat_lasso_test=cbind(y,x)
y_predicted <- predict(cv.fit,s=cv.fit$lambda.1se,newx=dat_lasso_test[,-1])
# R squared
rsqt <- R2(y_predicted,y)
rsqs_test<-append(rsqs_test,rsqt)
rmset <- RMSE(y_predicted,y)
rmses_test<-append(rmses_test,rmset)
#rsq
re=c(y_name,rsq,rsqt,rmse,rmset)
d<-rbind(d,re)
y_name_r=paste(y_name_r,rsqt,sep = "_test_", collapse = NULL)
#y_name
write.csv(select.v,file = paste('model/lasso_metab_RNA4_rmse/',y_name_r,'_lm_lasso.csv',sep=""),quote=F,row.names=T)
}
summary(rsqs)
#output Table1
colnames(d)=d[1,]
rownames(d)=d[,1]
d=d[-1,-1]
d=d[order(d[,2],decreasing=TRUE),]
#head(d)
write.table(d,file="Table1-4_lm_Lasso_c_model_performance_r2_rmse.txt",quote=F,row.names=T)
##bean plot
#r<-as.data.frame(read.table("Table1_Lasso_model_performance.txt",sep=" ",check.names = FALSE,header=T,row.names=1,stringsAsFactors=F))
r=d
#head(r)
train_tmp=as.data.frame(r[,1])
train_tmp$group="Training Set"
row.names(train_tmp)=row.names(r)
colnames(train_tmp)[1]="R2"
train_tmp$R2=as.numeric(as.character(train_tmp$R2))
summary(train_tmp$R2)
#head(train_tmp)
test_tmp=as.data.frame(r[,2])
test_tmp$group="Testing Set"
row.names(test_tmp)=row.names(r)
colnames(test_tmp)[1]="R2"
test_tmp$R2=as.numeric(as.character(test_tmp$R2))
summary(test_tmp$R2)
library(ggplot2)
tmp=rbind(train_tmp,test_tmp)
#head(tmp)
#ggplot(tmp, aes(x=group, y=R2, color=group)) +geom_violin(trim=FALSE) +geom_boxplot(width=0.1)+geom_jitter(size=0.8, alpha=0.9) +ggtitle("violin plot of R2")
head(tmp)
library(ggpubr)
compare_means(R2~group,data=tmp,paired=TRUE)
q=ggpaired(tmp,x="group",y ="R2",line.color="light grey",line.size=0.2,color = "group")
q=q+stat_compare_means(paired=TRUE,size=6) +scale_color_manual(values = c("blue", "black"))
q
#pdf(file="Fig2c_c.pdf")
#q
#dev.off()
#Plot RMSE
train_tmp=as.data.frame(r[,3])
train_tmp$group="Training Set"
row.names(train_tmp)=row.names(r)
colnames(train_tmp)[1]="RMSE"
train_tmp$RMSE=as.numeric(as.character(train_tmp$RMSE))
summary(train_tmp$RMSE)
#head(train_tmp)
test_tmp=as.data.frame(r[,4])
test_tmp$group="Testing Set"
row.names(test_tmp)=row.names(r)
colnames(test_tmp)[1]="RMSE"
test_tmp$RMSE=as.numeric(as.character(test_tmp$RMSE))
summary(test_tmp$RMSE)
library(ggplot2)
tmp=rbind(train_tmp,test_tmp)
#head(tmp)
p=ggplot(tmp, aes(x=group, y=RMSE, color=group)) +geom_violin(trim=FALSE) +geom_boxplot(width=0.1)+geom_jitter(size=0.8, alpha=0.9) +ggtitle("violin plot of RMSE") + +theme_bw() + theme(panel.grid=element_blank())
p
pdf(file="SFig2A.pdf")
p
dev.off()
Min. 1st Qu. Median Mean 3rd Qu. Max. 0.0000 0.3620 0.6010 0.5034 0.6810 0.8400
Min. 1st Qu. Median Mean 3rd Qu. Max. 0.0000 0.3620 0.6010 0.5034 0.6810 0.8400
Min. 1st Qu. Median Mean 3rd Qu. Max. -0.31200 -0.05500 0.00000 0.02203 0.07700 0.68200
| R2 | group | |
|---|---|---|
| <dbl> | <chr> | |
| 1-methylnicotinamide | 0.746 | Training Set |
| thymidine | 0.599 | Training Set |
| N-carbamoyl-beta-alanine | 0.551 | Training Set |
| phosphocreatine | 0.745 | Training Set |
| creatine | 0.647 | Training Set |
| 2-deoxyadenosine | 0.741 | Training Set |
| .y. | group1 | group2 | p | p.adj | p.format | p.signif | method |
|---|---|---|---|---|---|---|---|
| <chr> | <chr> | <chr> | <dbl> | <dbl> | <chr> | <chr> | <chr> |
| R2 | Training Set | Testing Set | 7.628589e-38 | 7.6e-38 | <2e-16 | **** | Wilcoxon |
Min. 1st Qu. Median Mean 3rd Qu. Max. 0.1127 0.1558 0.1935 0.2281 0.2666 0.9428
Min. 1st Qu. Median Mean 3rd Qu. Max. 0.1365 0.2408 0.3036 0.3192 0.3745 1.0098
| RMSE | group | |
|---|---|---|
| <dbl> | <chr> | |
| 1-methylnicotinamide | 0.6340246 | Training Set |
| thymidine | 0.3400804 | Training Set |
| N-carbamoyl-beta-alanine | 0.4072602 | Training Set |
| phosphocreatine | 0.3253078 | Training Set |
| creatine | 0.1676214 | Training Set |
| 2-deoxyadenosine | 0.2390083 | Training Set |
| .y. | group1 | group2 | p | p.adj | p.format | p.signif | method |
|---|---|---|---|---|---|---|---|
| <chr> | <chr> | <chr> | <dbl> | <dbl> | <chr> | <chr> | <chr> |
| RMSE | Training Set | Testing Set | 5.148478e-32 | 5.1e-32 | <2e-16 | **** | Wilcoxon |
library(ggplot2)
tmp=rbind(test_tmp,train_tmp)
head(tmp[order(tmp[,1],decreasing = T),])
p=ggplot(tmp, aes(x=group, y=RMSE, color=group)) +geom_violin(trim=FALSE)+scale_color_manual(values = c( "black","blue")) +geom_boxplot(width=0.1)+geom_jitter(size=0.8, alpha=0.9) +ggtitle("violin plot of RMSE") +theme_bw() + theme(panel.grid=element_blank())
p
pdf(file="SFig2A.pdf")
p
dev.off()
| RMSE | group | |
|---|---|---|
| <dbl> | <chr> | |
| acetylcholine | 1.0097576 | Testing Set |
| taurodeoxycholate/taurochenodeoxycholate1 | 0.9427888 | Training Set |
| taurodeoxycholate/taurochenodeoxycholate | 0.8854300 | Testing Set |
| 1-methylnicotinamide | 0.6845622 | Testing Set |
| 1-methylnicotinamide1 | 0.6340246 | Training Set |
| hypoxanthine | 0.6046056 | Testing Set |
##permutation test
options(scipen = 200)
options(digits=5)
RMSE = function(y_predicted,y){sqrt(mean((y - y_predicted)^2))}
R2=function(y_predicted,y){
round(1 - sum((y_predicted - y)^2) / sum((y - mean(y))^2),3)
}
load(file="model/training_set.RData")
library(glmnet)
seed =1007
rsqs <- NULL
rsqs_p<- NULL
lambdas <- 10^seq(2, -2, by = -.1)
for (i in 1:ncol(dat_metab)){
y_name=colnames(dat_metab)[i]
y_name_r=gsub("/", "-", y_name)
##generate x matrix
#get selected gene set
metab_file = paste('model/lm_metab_RNA_univariant/',y_name_r,'_rna_univariant_model.csv',sep="")
tmp<-as.data.frame(read.table(metab_file,sep=",",check.names = FALSE,header=T,stringsAsFactors=F))
#selected gene with R2 > Q3
cutoff = quantile(tmp[,4],0.9)[[1]] #top 10% gene selected
tmp=subset(tmp,adjust_R2>=cutoff&pvalue<0.05) #protential significant gene
#tmp=subset(tmp,R2>=cutoff)
#head(tmp)
#dim(tmp)
#hist(tmp[,"adjust_R2"],breaks=50)
#extract geneset
sel_gene=unique(tmp$Gene_symbol)
dat_top_genes=dat_s_train[,colnames(dat_s_train) %in% sel_gene]
x=as.matrix(dat_top_genes)
y=dat_s_train[row.names(x),y_name] #make sure that y and x are in the same order
dat_lasso=cbind(y,x)
cv.fit <- cv.glmnet(x=data.matrix(dat_lasso[,-1]),y=data.matrix(dat_lasso[,1]),alpha = 1,family = 'gaussian',standardize=TRUE,grouped=FALSE,nfolds = 10,lambda = lambdas)
##check trainning set performance
y_predicted <- predict(cv.fit,s=cv.fit$lambda.1se,newx=data.matrix(dat_lasso[,-1]))
##evaluate performance
rsq <- R2(y_predicted,y)
rsqs<-append(rsqs,rsq)
#permutation test
n=sample(c(1:nrow(dat_s_train)), nrow(dat_s_train), replace = FALSE)
y = y[n]
dat_lasso=cbind(y,x)
cv.fit <- cv.glmnet(x=data.matrix(dat_lasso[,-1]),y=data.matrix(dat_lasso[,1]),alpha = 1,family = 'gaussian',standardize=TRUE,grouped=FALSE,nfolds = 10,lambda = lambdas)
##check trainning set performance
y_predicted <- predict(cv.fit,s=cv.fit$lambda.1se,newx=data.matrix(dat_lasso[,-1]))
##evaluate performance
rsq_p <- R2(y_predicted,y)
rsqs_p<-append(rsqs_p,rsq_p)
}
dim(rsqs_p)
sum(rsqs_p==0)
#par(mfrow=c(1,2))
#p1<-hist(rsqs,breaks=100)
#p2=hist(rsqs_p,breaks=100)
#par(mfrow=c(1,1))
#plot(p1,col=rgb(0,0,1,1/4),xlim=c(-0.5,1)) # first histogram ,xlim=c(-0.002,0.2)
#plot(p2, col=rgb(1,0,0,1/4), add=T) # second
NULL
##single media test (RPMI_1640)
options(scipen = 200)
options(digits=5)
RMSE = function(y_predicted,y){sqrt(mean((y - y_predicted)^2))}
R2=function(y_predicted,y){
round(1 - sum((y_predicted - y)^2) / sum((y - mean(y))^2),3)
}
load(file="model/training_set.RData")
library(glmnet)
#extract single media samples
dat_s_train=subset(dat_s_train,Cell_culture_media=="RPMI_1640")
dim(dat_s_train)
###############################
##UNIvariant linear model
##############################
library(glmnet)
library(broom)
for (i in 1:ncol(dat_metab)) {
y_name=colnames(dat_metab)[i]
y=as.numeric(as.character(dat_s_train[,y_name]))
lr<-lapply(1:ncol(dat_rna),function(i){
x_name=colnames(dat_rna)[i]
x=dat_s_train[,x_name]
fit=lm(y~x)
pvalue=signif(anova(fit)["x",5],3) #univariant, pvalue at pos 2
ar2=signif(summary(fit)$adj.r.square,3)
re<-c(y_name,x_name,pvalue,ar2)
return(re)
} )
d<-do.call(rbind, lr)
d<-as.data.frame(d)
colnames(d)<-c("Predicted_Metabolites","Gene_symbol","pvalue","adjust_R2")
d<-d[order(d[,4],decreasing=TRUE),]
y_name=gsub("/", "-", y_name)
write.csv(d,file = paste('model_RPMI/lm_metab_rna_univariant/',y_name,'_rna_univariant_model.csv',sep=""),quote=F,row.names=F)
}
#################################
##Multivariate LASSO model
#################################
seed =1007
rsqs <- NULL
d<- NULL
lambdas <- 10^seq(2, -2, by = -.1)
for (i in 1:ncol(dat_metab)){
y_name=colnames(dat_metab)[i]
y_name_r=gsub("/", "-", y_name)
##generate x matrix
#get selected gene set
metab_file = paste('model_RPMI/lm_metab_rna_univariant/',y_name_r,'_rna_univariant_model.csv',sep="")
tmp<-as.data.frame(read.table(metab_file,sep=",",check.names = FALSE,header=T,stringsAsFactors=F))
#selected gene with R2 > Q3
cutoff = quantile(tmp[,4],0.9)[[1]] #top 10% gene selected
tmp=subset(tmp,adjust_R2>=cutoff&pvalue<0.05) #protential significant gene
#head(tmp)
#dim(tmp)
#hist(tmp[,"adjust_R2"],breaks=50)
#extract geneset
sel_gene=unique(tmp$Gene_symbol)
dat_top_genes=dat_s_train[,colnames(dat_s_train) %in% sel_gene]
x=as.matrix(dat_top_genes)
y=dat_s_train[row.names(x),y_name] #make sure that y and x are in the same order
dat_lasso=cbind(y,x)
cv.fit <- cv.glmnet(x=data.matrix(dat_lasso[,-1]),y=data.matrix(dat_lasso[,1]),alpha = 1,family = 'gaussian',standardize=TRUE,grouped=FALSE,nfolds = 10,lambda = lambdas)
##check trainning set performance
y_predicted <- predict(cv.fit,s=cv.fit$lambda.1se,newx=data.matrix(dat_lasso[,-1]))
##evaluate performance
rsq <- R2(y_predicted,y)
rsqs<-append(rsqs,rsq)
re=c(y_name,rsq)
d<-rbind(d,re)
}
d=as.data.frame(d)
colnames(d)=c("metabolite","R2")
rownames(d)=d[,1]
d$group="RPMI_1640"
r<-as.data.frame(read.table("doc/Table1_lm_Lasso_model_performance.txt",sep=" ",check.names = FALSE,header=T,row.names=1,stringsAsFactors=F))
r$group="Multiple media"
tmp1=r[,c("TrainingSet_R2","group")]
colnames(tmp1)=c("R2","group")
tmp2=d[,c("R2","group")]
tmp=rbind(tmp1,tmp2)
tmp$R2=as.numeric(as.character(tmp$R2))
head(tmp)
library(ggpubr)
compare_means(R2~group,data=tmp,paired=TRUE)
q=ggpaired(tmp,x="group",y ="R2",line.color="light grey",line.size=0.2,color = "group")
q=q+stat_compare_means(paired=TRUE,size=6)+scale_color_manual(values = c("blue", "black"))
q
| R2 | group | |
|---|---|---|
| <dbl> | <chr> | |
| 1-methylnicotinamide | 0.769 | Multiple media |
| thymidine | 0.666 | Multiple media |
| phosphocreatine | 0.728 | Multiple media |
| N-carbamoyl-beta-alanine | 0.497 | Multiple media |
| creatine | 0.595 | Multiple media |
| 2-deoxyadenosine | 0.581 | Multiple media |
Loading required package: ggplot2 Warning message: “package ‘ggplot2’ was built under R version 3.6.3”
| .y. | group1 | group2 | p | p.adj | p.format | p.signif | method |
|---|---|---|---|---|---|---|---|
| <chr> | <chr> | <chr> | <dbl> | <dbl> | <chr> | <chr> | <chr> |
| R2 | Multiple media | RPMI_1640 | 0.0022341 | 0.0022 | 0.0022 | ** | Wilcoxon |
#permutation test
options(scipen = 200)
options(digits=5)
RMSE = function(y_predicted,y){sqrt(mean((y - y_predicted)^2))}
R2=function(y_predicted,y){
round(1 - sum((y_predicted - y)^2) / sum((y - mean(y))^2),3)
}
##permutation test
options(scipen = 200)
options(digits=5)
load(file="model/training_set.RData")
library(glmnet)
seed =1007
rsqs <- NULL
rsqs_p <- NULL
d<-c("metabolite","Permutation_R2")
lambdas <- 10^seq(2, -2, by = -.1)
#for (i in 1:3){
for (i in 1:ncol(dat_metab)){
#y_name="1-methylnicotinamide"
y_name=colnames(dat_metab)[i]
y_name_r=gsub("/", "-", y_name)
##generate x matrix
x=as.matrix(dat_s_train[,colnames(dat_rna)])
dim(x)
#normal model training
y=dat_s_train[row.names(x),y_name] #make sure that y and x are in the same order
dat_lasso=cbind(y,x)
cv.fit <- cv.glmnet(x=data.matrix(dat_lasso[,-1]),y=data.matrix(dat_lasso[,1]),alpha = 1,family = 'gaussian',standardize=TRUE,grouped=FALSE,nfolds = 10,lambda = lambdas)
##check trainning set performance
y_predicted <- predict(cv.fit,s=cv.fit$lambda.1se,newx=data.matrix(dat_lasso[,-1]))
##evaluate performance
rsq <- R2(y_predicted,y)
rsqs<-append(rsqs,rsq)
#permutation test
n=sample(c(1:nrow(dat_s_train)), nrow(dat_s_train), replace = FALSE)
y = y[n]
dat_lasso=cbind(y,x)
cv.fit <- cv.glmnet(x=data.matrix(dat_lasso[,-1]),y=data.matrix(dat_lasso[,1]),alpha = 1,family = 'gaussian',standardize=TRUE,grouped=FALSE,nfolds = 10,lambda = lambdas)
##check trainning set performance
y_predicted <- predict(cv.fit,s=cv.fit$lambda.1se,newx=data.matrix(dat_lasso[,-1]))
##evaluate performance
# Sum of Squares Total and Error
rsq_p <- R2(y_predicted,y)
rsqs_p<-append(rsqs_p,rsq_p)
}
head(rsq_p)
sum(rsqs_p==0)
#par(mfrow=c(1,2))
p1<-hist(rsqs,breaks=100)
#p2=hist(rsqs_p,breaks=100)
#par(mfrow=c(1,1))
#plot(p1,col=rgb(0,0,1,1/4),xlim=c(-0.5,1)) # first histogram ,xlim=c(-0.002,0.2)
#plot(p2, col=rgb(1,0,0,1/4), add=T) # second
r<-as.data.frame(read.table("doc/Table1_lm_Lasso_model_performance.txt",sep=" ",check.names = FALSE,header=T,row.names=1,stringsAsFactors=F))
p3=hist(as.numeric(as.character(r$TrainingSet_R2)),breaks=100)
plot(p3,col=rgb(0,0,1,1/4),xlim=c(0,1)) # first histogram ,xlim=c(-0.002,0.2)
plot(p1, col=rgb(1,0,0,1/4), add=T)
#pdf(file="Fig_E2.pdf")
#plot(p3,col=rgb(0,0,1,1/4),xlim=c(0,1))
#plot(p1, col=rgb(1,0,0,1/4), add=T)
#dev.off()
Warning message in file(file, "rt"): “cannot open file 'Table1_lm_Lasso_model_performance.txt': No such file or directory”
Error in file(file, "rt"): cannot open the connection
Traceback:
1. as.data.frame(read.table("Table1_lm_Lasso_model_performance.txt",
. sep = " ", check.names = FALSE, header = T, row.names = 1,
. stringsAsFactors = F))
2. read.table("Table1_lm_Lasso_model_performance.txt", sep = " ",
. check.names = FALSE, header = T, row.names = 1, stringsAsFactors = F)
3. file(file, "rt")
r<-as.data.frame(read.table("doc/Table1_lm_Lasso_model_performance.txt",sep=" ",check.names = FALSE,header=T,row.names=1,stringsAsFactors=F))
p3=hist(as.numeric(as.character(r$TrainingSet_R2)),breaks=100)
plot(p3,col=rgb(0,0,1,1/4),xlim=c(0,1)) # first histogram ,xlim=c(-0.002,0.2)
plot(p1, col=rgb(1,0,0,1/4), add=T)
#loading metabolism data
load(file="dat/CLsample_454_metabolites&rna.RData")
dim(dat_metab)
#head(dat_metab)
#read in proteomic data
dat_p<-as.data.frame(t(read.table("dat/Proteomics_Protein_Quant_Normalized.csv",sep=",",check.names = FALSE,header=T,row.names=1,stringsAsFactors=F)))
dim(dat_p)
#merge with metabolites data and gain 454 shared samples
dat_m_p=merge(dat_metab,dat_p,by="row.names")
row.names(dat_m_p) <- dat_m_p[,1]
dat_m_p<-dat_m_p[,-1]
dim(dat_m_p)
head(dat_m_p)
#save(dat_metab,dat_p,dat_m_p,file="dat/CLsample_351_metabolites&protein.RData")
| 2-aminoadipate | 3-phosphoglycerate | alpha-glycerophosphate | 4-pyridoxate | aconitate | adenine | adipate | alpha-ketoglutarate | AMP | citrate | ⋯ | Q7Z3Q1-2_S46A3_HUMAN | P03891_NU2M_HUMAN | P03897_NU3M_HUMAN | P22004_BMP6_HUMAN | Q8IXQ9_MET20_HUMAN | Q9Y258_CCL26_HUMAN | P20292_AL5AP_HUMAN | Q9H1C7_CYTM1_HUMAN | Q99735_MGST2_HUMAN | Q9P003_CNIH4_HUMAN | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | ⋯ | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | |
| A101D_SKIN | 5.5822 | 6.3083 | 6.4331 | 5.8279 | 6.4967 | 5.8147 | 5.5976 | 6.2571 | 6.1522 | 6.4059 | ⋯ | 0.000 | 0.24855 | 0.268697 | 0 | 0 | 0 | -0.12871 | 0.000000 | 1.30465 | 0.631377 |
| A172_CENTRAL_NERVOUS_SYSTEM | 6.4165 | 5.2434 | 6.4707 | 5.6654 | 6.0704 | 5.7134 | 5.8785 | 5.9173 | 5.8503 | 5.9773 | ⋯ | 0.000 | 0.00000 | 0.000000 | 0 | 0 | 0 | -1.60023 | 1.643414 | 0.00000 | 0.933261 |
| A204_SOFT_TISSUE | 6.0035 | 5.7060 | 5.3266 | 6.4723 | 5.7476 | 6.0179 | 5.9495 | 5.7894 | 5.6734 | 5.6976 | ⋯ | -1.083 | -0.83103 | -0.353890 | 0 | 0 | 0 | -0.34900 | 0.000000 | 0.00000 | 0.019386 |
| A2058_SKIN | 6.1238 | 6.2019 | 5.4847 | 5.8878 | 5.9063 | 6.2414 | 5.7304 | 6.0562 | 5.7884 | 5.9254 | ⋯ | 0.000 | 0.00000 | -0.036705 | 0 | 0 | 0 | 0.00000 | 0.137335 | 0.54260 | -0.068969 |
| A2780_OVARY | 6.1182 | 6.0895 | 5.8367 | 6.2376 | 6.0869 | 6.0992 | 5.4058 | 6.5338 | 5.6401 | 5.8235 | ⋯ | 0.000 | 0.00000 | -0.007448 | 0 | 0 | 0 | -0.33662 | 0.236043 | 0.00000 | 0.152670 |
| A375_SKIN | 6.1254 | 5.7572 | 5.7957 | 6.1359 | 5.8073 | 5.8447 | 6.3890 | 5.7792 | 5.6687 | 5.8477 | ⋯ | 0.000 | 0.00000 | 0.537536 | 0 | 0 | 0 | 0.00000 | 0.010426 | -0.22883 | 0.037025 |
7:3 training
load(file="model-proteomic/training_set.RData")
library(glmnet)
library(broom)
y_name="1-methylnicotinamide"
metab_file = paste('model-proteomic/lm_metab_p_univariant/',y_name,'_protein_univariant_model.csv',sep="")
tmp<-as.data.frame(read.table(metab_file,sep=",",check.names = FALSE,header=T,stringsAsFactors=F))
#selected gene with R2 > Q3
cutoff = quantile(tmp[,"adjust_R2"],0.9)[[1]] #top 10% gene selected
tmp=subset(tmp,adjust_R2>=cutoff&pvalue<0.05) #protential significant gene
#extract geneset
sel_gene=unique(tmp$Gene_symbol)
dat_top_genes=dat_s_train[,colnames(dat_s_train) %in% sel_gene]
x=as.matrix(dat_top_genes)
y=dat_s_train[row.names(x),y_name] #make sure that y and x are in the same order
dat_lasso=cbind(y,x)
lambdas <- 10^seq(2, -2, by = -.1)
#fit = glmnet(x,y,alpha = 1,family = "gaussian",standardize=TRUE)
cv.fit <- cv.glmnet(x=data.matrix(dat_lasso[,-1]),y=data.matrix(dat_lasso[,1]),alpha = 1,family = 'gaussian',standardize=TRUE,grouped=FALSE,nfolds = 10,lambda = lambdas)
cv.fit$cvm
cv.fit$cvm[cv.fit$lambda==cv.fit$lambda.1se]
cv.fit$cvm[cv.fit$lambda==cv.fit$lambda.min]
plot(cv.fit)
#eval_results(y_test, predictions_test, test)
##########################################
#set 70% training set and 30% testing set
#########################################
#nn=0.7 #70% for training set
#sub<-sample(1:nrow(dat_m_p),round(nrow(dat_m_p)*nn))
#length(sub)
#dat_s_train=dat_m_p[sub,]
#dat_s_test=dat_m_p[-sub,]
#dim(dat_s_train)
#dim(dat_s_test)
#head(dat_s_train)
#save
#save(dat_s_train,dat_s_test,file="model-proteomic/training_set.RData")
load(file="model-proteomic/training_set.RData")
###############################
##UNIvariant linear model
##############################
library(glmnet)
library(broom)
#for (i in 1:ncol(dat_metab)) {
#for (i in 1:3) {
#y_name=colnames(dat_metab)[i]
#y_name="1-methylnicotinamide"
#y=as.numeric(as.character(dat_s_train[,y_name]))
#lr<-lapply(1:ncol(dat_p),function(i){
# x_name=colnames(dat_p)[i]
# x=dat_s_train[,x_name]
# fit=lm(y~x)
# pvalue=signif(anova(fit)["x",5],3) #univariant, pvalue at pos 2
# ar2=signif(summary(fit)$adj.r.square,3)
# re<-c(y_name,x_name,pvalue,ar2)
# return(re)
# } )
#d<-do.call(rbind, lr)
#d<-as.data.frame(d)
#colnames(d)<-c("Predicted_Metabolites","Gene_symbol","pvalue","adjust_R2")
#d<-d[order(d[,4],decreasing=TRUE),]
#y_name=gsub("/", "-", y_name)
#write.csv(d,file = paste('model-proteomic/lm_metab_p_univariant/',y_name,'_protein_univariant_model.csv',sep=""),quote=F,row.names=F)
#}
###############################
##model training and testing
###############################
library(glmnet)
seed =1007
rsqs <- NULL
rsqs_test <- NULL
d<-c("metabolite","TrainingSet_R2","TestingSet_R2")
for (i in 1:ncol(dat_metab)){
#for (i in 1:3) {
#y_name="1-methylnicotinamide"
y_name=colnames(dat_metab)[i]
y_name_r=gsub("/", "-", y_name)
##generate x matrix
#get selected gene set
metab_file = paste('model-proteomic/lm_metab_p_univariant/',y_name_r,'_protein_univariant_model.csv',sep="")
tmp<-as.data.frame(read.table(metab_file,sep=",",check.names = FALSE,header=T,stringsAsFactors=F))
#selected gene with R2 > Q3
cutoff = quantile(tmp[,"adjust_R2"],0.9)[[1]] #top 10% gene selected
tmp=subset(tmp,adjust_R2>=cutoff&pvalue<0.05) #protential significant gene
#extract geneset
sel_gene=unique(tmp$Gene_symbol)
dat_top_genes=dat_s_train[,colnames(dat_s_train) %in% sel_gene]
x=as.matrix(dat_top_genes)
y=dat_s_train[row.names(x),y_name] #make sure that y and x are in the same order
dat_lasso=cbind(y,x)
lambdas <- 10^seq(2, -2, by = -.1)
#fit = glmnet(x,y,alpha = 1,family = "gaussian",standardize=TRUE)
cv.fit <- cv.glmnet(x=data.matrix(dat_lasso[,-1]),y=data.matrix(dat_lasso[,1]),alpha = 1,family = 'gaussian',standardize=TRUE,grouped=FALSE,nfolds = 10,lambda = lambdas)
#cv.fit$cvm[cv.fit$lambda==cv.fit$lambda.1se]
#cv.fit$cvm[cv.fit$lambda==cv.fit$lambda.min]
#plot(cv.fit)
##check trainning set performance
y_predicted <- predict(cv.fit,s=cv.fit$lambda.1se,newx=data.matrix(dat_lasso[,-1]))
##evaluate performance
sst <- sum((y - mean(y))^2)
sse <- sum((y - y_predicted)^2)
rsq <- round(1 - sse / sst,3)
rsqs<-append(rsqs,rsq)
#select features
tmp_coeffs <- coef(cv.fit, s = "lambda.1se")
##output coef as matrix
output_coef=data.frame(name = tmp_coeffs@Dimnames[[1]][tmp_coeffs@i + 1], coefficient = tmp_coeffs@x)
row.names(output_coef)=output_coef$name
select.varialbes = tmp_coeffs@Dimnames[[1]][tmp_coeffs@i + 1]
#length(select.varialbes)
select.v=output_coef[select.varialbes,]
select.v=select.v[order(select.v[,2],decreasing=TRUE),]
#select.v
y_name_r=paste(y_name_r,rsq,sep = "_", collapse = NULL)
##check performance in testing set
x=as.matrix(dat_s_test[,colnames(dat_s_test) %in% sel_gene])
y=dat_s_test[row.names(x),y_name]
dat_lasso_test=cbind(y,x)
y_predicted <- predict(cv.fit,s=cv.fit$lambda.1se,newx=dat_lasso_test[,-1])
# Sum of Squares Total and Error
sst <- sum((y - mean(y))^2)
sse <- sum((y_predicted - y)^2)
# R squared
rsqt <- round(1 - sse / sst,3)
rsqs_test<-append(rsqs_test,rsqt)
#rsq
re=c(y_name,rsq,rsqt)
d<-rbind(d,re)
y_name_r=paste(y_name_r,rsqt,sep = "_test_", collapse = NULL)
#y_name
write.csv(select.v,file = paste('model-proteomic/lasso_metab_p/',y_name_r,'_lm_lasso.csv',sep=""),quote=F,row.names=F)
}
summary(rsqs)
#p1=hist(rsqs,breaks=50)
#summary(rsqs_test)
#p2=hist(rsqs_test,breaks=50)
#plot(p1,col=rgb(0,0,1,1/4),xlim=c(-1.2,1)) # first histogram ,xlim=c(-0.002,0.2)
#plot(p2, col=rgb(1,0,0,1/4), add=T)
#output
colnames(d)=d[1,]
rownames(d)=d[,1]
d=d[-1,-1]
d=d[order(d[,2],decreasing=TRUE),]
head(d)
write.table(d,file="Table3_lm_Lasso_model_performance_proteomic.txt",quote=F,row.names=T)
##(shell command)
##check predictive metabolites
#ls |sort -t "_" -rnk2 - |head
##check size of features
#for i in `ls |sort -t "_" -rnk2 - |head -n *`; do wc -l $i;done
Min. 1st Qu. Median Mean 3rd Qu. Max. 0.000 0.393 0.591 0.519 0.703 0.872
| TrainingSet_R2 | TestingSet_R2 | |
|---|---|---|
| 1-methylnicotinamide | 0.659 | 0.525 |
| C18:1-CE | 0.463 | 0.437 |
| C18:2-CE | 0.583 | 0.397 |
| N-carbamoyl-beta-alanine | 0.525 | 0.382 |
| C20:4-CE | 0.37 | 0.37 |
| C16:1-CE | 0.555 | 0.36 |
#check RNA and Protein shared predictable (>median) metabolites
p<-as.data.frame(read.table("Table3_lm_Lasso_model_performance_proteomic.txt",sep=" ",check.names = FALSE,header=T,row.names=1,stringsAsFactors=F))
r<-as.data.frame(read.table("Table1_lm_Lasso_model_performance.txt",sep=" ",check.names = FALSE,header=T,row.names=1,stringsAsFactors=F))
p$group="protein"
r$group="RNA"
tmp=rbind(p,r)
#plot
library(ggpubr)
compare_means(TrainingSet_R2 ~ group,data=tmp)
p=ggboxplot(tmp, x="group",y = "TrainingSet_R2", color = "group", add = "jitter")+scale_color_manual(values = c("pink", "blue"))
p=p+stat_compare_means(size=6)
p
pdf(file="Fig2d.pdf")
p
dev.off()
| .y. | group1 | group2 | p | p.adj | p.format | p.signif | method |
|---|---|---|---|---|---|---|---|
| <chr> | <chr> | <chr> | <dbl> | <dbl> | <chr> | <chr> | <chr> |
| TrainingSet_R2 | protein | RNA | 0.28866 | 0.29 | 0.29 | ns | Wilcoxon |
#check RNA and Protein shared predictable (>median) metabolites
library(VennDiagram)
p<-as.data.frame(read.table("Table3_lm_Lasso_model_performance_proteomic.txt",sep=" ",check.names = FALSE,header=T,row.names=1,stringsAsFactors=F))
r<-as.data.frame(read.table("Table1_lm_Lasso_model_performance.txt",sep=" ",check.names = FALSE,header=T,row.names=1,stringsAsFactors=F))
#p1=hist(rsqs,breaks=50)
#summary(rsqs_test)
#p2=hist(rsqs_test,breaks=50)
#plot(p1,col=rgb(0,0,1,1/4),xlim=c(-1.2,1)) # first histogram ,xlim=c(-0.002,0.2)
#plot(p2, col=rgb(1,0,0,1/4), add=T)
#get top 50% predictable metabolites
cutoff = quantile(p[,"TestingSet_R2"],0.5)[[1]] #top 50% metabolite selected
cutoff
p=row.names(subset(p,TestingSet_R2>=cutoff))
cutoff = quantile(r[,"TestingSet_R2"],0.5)[[1]] #top 50% metabolite selected
r=row.names(subset(r,TestingSet_R2>=cutoff))
#plot
A=p
B=r
Length_A<-length(A)
Length_B<-length(B)
Length_AB<-length(intersect(A,B))
intersect(A,B)
T<-venn.diagram(list(A=A,B=B),filename=NULL,lwd=1,lty=2, ,col=c('red','blue'),fill=c('red','blue'),cat.col=c('red','blue'),rotation.degree=90)
grid.draw(T)
pdf(file="Fig2e.pdf")
grid.draw(T)
dev.off()
Loading required package: grid
Loading required package: futile.logger
Attaching package: ‘VennDiagram’
The following object is masked from ‘package:car’:
ellipse
The following object is masked from ‘package:ggpubr’:
rotate
library(Biobase)
library(genefilter)
library(limma)
library(RColorBrewer)
library(GSVA) #need R 3.6
library(pheatmap)
load(file="dat/CLsample_454_metabolites&rna.RData")
###########################################################
##calculate METABOLISM GSVA score
###########################################################
##########fib
sel_gmt=read.table("dat/GSVA_pathway_metabolites.txt",header = T,na.strings = c(" "),sep = "\t")
sel_gmt=sel_gmt[,-1]
dim(sel_gmt)
sets=as.list(sel_gmt)
sets=lapply(sets, function(x) x[!is.na(x)])
#########cal
end=length(target_features)+1
exprMatrix=t(dat[,-(1:end)])
gsva_matrix<- gsva(as.matrix(exprMatrix), sets,method='ssgsea',kcdf='Gaussian',abs.ranking=TRUE)
score.gsva.metab=as.data.frame(t(gsva_matrix))
head(score.gsva.metab)
###########################################################
##calculate RNA GSVA score
###########################################################
##########fib
sel_gmt=read.table("dat/GSVA_pathway_rna.txt",header = T,na.strings = c(" "),sep = "\t")
sel_gmt=sel_gmt[,-1]
dim(sel_gmt)
sets=as.list(sel_gmt)
sets=lapply(sets, function(x) x[!is.na(x)])
#sets[1]
##select metabolism pathway geneset
p_gene<-as.data.frame(read.table("dat/pathway_gene_list.txt",sep="\t",check.names = FALSE,row.names=1,header=F,stringsAsFactors=F))
#DB_pw_protein_RNA.list, pathway_gene_list.txt
#########cal
exprMatrix=t(dat_rna[row.names(dat),colnames(dat_rna) %in% row.names(p_gene)])
dim(exprMatrix)
gsva_matrix<- gsva(as.matrix(exprMatrix), sets,method='ssgsea',kcdf='Gaussian',abs.ranking=TRUE)
score.gsva.rna=as.data.frame(t(gsva_matrix))
head(score.gsva.rna)
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
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anyDuplicated, append, as.data.frame, basename, cbind, colnames,
dirname, do.call, duplicated, eval, evalq, Filter, Find, get, grep,
grepl, intersect, is.unsorted, lapply, Map, mapply, match, mget,
order, paste, pmax, pmax.int, pmin, pmin.int, Position, rank,
rbind, Reduce, rownames, sapply, setdiff, sort, table, tapply,
union, unique, unsplit, which, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Attaching package: ‘limma’
The following object is masked from ‘package:BiocGenerics’:
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Warning message:
“package ‘RColorBrewer’ was built under R version 3.6.3”
Estimating ssGSEA scores for 33 gene sets. | | 0%Using parallel with 40 cores |======================================================================| 100%
| SMP0000654 | SMP0000004 | SMP0000020 | SMP0000033 | SMP0000046 | SMP0000072 | SMP0000007 | SMP0000063 | SMP0000059 | SMP0000009 | ⋯ | SMP0000060 | SMP0000040 | SMP0000016 | SMP0000010 | SMP0000444 | SMP0000008 | SMP0000064 | SMP0000037 | SMP0000030 | SMP0000029 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | ⋯ | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | |
| 22RV1_PROSTATE | -0.17228325 | 0.18073430 | 0.16732886 | 0.15830403 | 0.079310291 | 0.101992924 | 0.080118939 | -0.06887908 | 0.150052469 | 0.22120477 | ⋯ | -0.24193957 | -0.234396387 | -0.16846422 | -0.26435324 | -0.21768437 | -0.09371931 | -0.22780550 | -0.12410389 | 0.16339394 | 0.01536271 |
| 253J_URINARY_TRACT | 0.34263757 | 0.03193542 | -0.08745161 | 0.05774638 | -0.009568422 | 0.104633440 | -0.013760649 | 0.12274166 | -0.004460654 | 0.12244491 | ⋯ | 0.26954377 | 0.403885118 | 0.11948850 | 0.34204526 | 0.20113109 | 0.15609657 | 0.42469909 | 0.33349352 | -0.01145757 | 0.20405144 |
| 42MGBA_CENTRAL_NERVOUS_SYSTEM | 0.07076401 | 0.03281922 | 0.04123476 | 0.01397129 | -0.011014094 | -0.056990255 | 0.211002899 | 0.10046907 | 0.016484623 | -0.06181219 | ⋯ | -0.06493233 | -0.003828961 | 0.00686836 | -0.08686531 | -0.04153267 | 0.12751033 | -0.01224850 | 0.01787709 | 0.16163372 | -0.13339331 |
| 5637_URINARY_TRACT | 0.19133916 | 0.16746248 | 0.22633089 | 0.15176862 | 0.084818463 | 0.164897983 | 0.087357254 | 0.04538614 | 0.235368810 | 0.21240723 | ⋯ | 0.18199000 | 0.257491921 | -0.02146735 | 0.09603968 | -0.20592597 | 0.02955803 | 0.07315508 | 0.12106748 | -0.05625963 | 0.22560536 |
| 59M_OVARY | -0.09202410 | 0.05642061 | -0.09822667 | 0.09303002 | 0.052261572 | -0.000875506 | 0.071069405 | 0.07504178 | -0.050134624 | 0.09335499 | ⋯ | -0.11166281 | -0.231626691 | -0.07671347 | -0.36959122 | -0.17363278 | 0.11429077 | -0.02412098 | 0.10785009 | -0.19588583 | 0.11649213 |
| 639V_URINARY_TRACT | 0.15031903 | 0.20666641 | 0.06478097 | 0.16415885 | 0.077674994 | 0.081607469 | -0.008976883 | 0.12684479 | -0.002650352 | -0.03159904 | ⋯ | 0.06048571 | 0.239496722 | 0.18666585 | 0.38668519 | 0.19733919 | 0.16467456 | 0.20762146 | 0.13811189 | 0.12540129 | 0.16498653 |
Warning message in .local(expr, gset.idx.list, ...): “554 genes with constant expression values throuhgout the samples.”
Estimating ssGSEA scores for 84 gene sets. | | 0%Using parallel with 40 cores |======================================================================| 100%
| SMP0000074 | SMP0000050 | SMP0000032 | SMP0000075 | SMP0000025 | SMP0000004 | SMP0000046 | SMP0000072 | SMP0000034 | SMP0000128 | ⋯ | SMP0000468 | SMP0000465 | SMP0000071 | SMP0000070 | SMP0000065 | SMP0000055 | SMP0000052 | SMP0000021 | SMP0000018 | SMP0000017 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | ⋯ | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | |
| 22RV1_PROSTATE | 0.1710280 | 0.1876968 | 0.05797409 | -0.13348900 | 0.002030665 | 0.019490816 | 0.06177117 | 0.038207376 | -0.17877500 | 0.2313601 | ⋯ | 0.2257888 | 0.080249216 | 0.14621626 | 0.06980617 | 0.05181741 | -0.1772691 | 0.01844654 | -0.1087014 | 0.10452972 | -0.10555665 |
| 253J_URINARY_TRACT | 0.2659107 | 0.1901338 | 0.01731159 | -0.06517332 | -0.032632547 | -0.005569878 | 0.11246989 | -0.013195241 | -0.06369530 | 0.2115984 | ⋯ | 0.2017451 | 0.041110101 | -0.05244280 | 0.06250370 | -0.07608961 | -0.3269689 | -0.07035118 | -0.2196447 | 0.04679692 | -0.07082330 |
| 42MGBA_CENTRAL_NERVOUS_SYSTEM | 0.2094232 | 0.1927580 | 0.01121154 | -0.19271149 | 0.011573266 | -0.055463015 | 0.15398127 | 0.009894203 | -0.05777786 | 0.2515434 | ⋯ | 0.1801670 | -0.092670523 | 0.07835344 | -0.05082813 | -0.02786774 | -0.2170479 | -0.15685862 | -0.1636954 | 0.06064670 | 0.03393276 |
| 5637_URINARY_TRACT | 0.1821983 | 0.2471161 | -0.04682113 | -0.08859175 | 0.046797062 | -0.110639809 | 0.19250284 | -0.021956378 | -0.05077077 | 0.2196593 | ⋯ | 0.2391157 | 0.022329717 | -0.05399360 | 0.10152182 | -0.09255369 | -0.2363316 | -0.22708075 | -0.2826545 | 0.07523256 | 0.02594079 |
| 59M_OVARY | 0.1846892 | 0.1628052 | 0.01587981 | -0.12679960 | 0.008348587 | -0.001555599 | 0.04449206 | 0.019286585 | -0.11525122 | 0.2106624 | ⋯ | 0.2559401 | 0.008681784 | 0.12337093 | -0.04950035 | -0.12032514 | -0.3038215 | -0.21541377 | -0.2912405 | 0.17146611 | -0.09063602 |
| 639V_URINARY_TRACT | 0.1723142 | 0.2150533 | 0.02075926 | -0.20617960 | 0.024498001 | 0.038446527 | 0.14825424 | 0.023467338 | -0.12506015 | 0.2409099 | ⋯ | 0.1574446 | 0.070746677 | 0.18980973 | 0.01681793 | -0.07225939 | -0.2342529 | -0.16245924 | -0.2218625 | -0.01134232 | -0.00217660 |
###########################################################
##check metabolism & rna correlation in the same pathway
###########################################################
score.gsva.metab=score.gsva.metab[row.names(dat_m_rna),]
score.gsva.rna=score.gsva.rna[row.names(score.gsva.metab),]
dim(score.gsva.metab)
dim(score.gsva.rna)
#length(colnames(score.gsva.metab))
#length(colnames(score.gsva.rna))
#get shared pathway
p=intersect(colnames(score.gsva.rna),colnames(score.gsva.metab))
#COORELATION
cor <- NULL
d<-NULL
end=dim(score.gsva.metab)[2]
for (i in p) {
x = score.gsva.metab[,i]
y = score.gsva.rna[,i]
cor_n <- cor(x, y, method = "pearson")
SMPID=i
re<-c(SMPID,cor_n)
d<-rbind(d,re)
}
d<-as.data.frame(d)
colnames(d)<-c("SMPID","pearson_cor")
#d<-d[-1,]
d<-d[order(d[,2],decreasing=TRUE),]
d[1:10,]
hist(as.numeric(as.character(d$pearson_cor)),breaks=50)
summary(as.numeric(as.character(d$pearson_cor)))
write.csv(d,file="doc/06GSVA_correlation.csv",quote=F,row.names=T)
| SMPID | pearson_cor | |
|---|---|---|
| <fct> | <fct> | |
| re.20 | SMP0000043 | 0.250159996085783 |
| re.15 | SMP0000058 | 0.174163056047054 |
| re.3 | SMP0000072 | 0.156375621497644 |
| re.13 | SMP0000044 | 0.153956346595616 |
| re.28 | SMP0000010 | 0.153066447242865 |
| re.19 | SMP0000048 | 0.147054485632727 |
| re.1 | SMP0000004 | 0.140152133087509 |
| re.12 | SMP0000006 | 0.138044003304484 |
| re.26 | SMP0000444 | 0.0792567866645188 |
| re.9 | SMP0000033 | 0.0507208319383439 |
Min. 1st Qu. Median Mean 3rd Qu. Max. -0.172020 -0.054054 -0.001884 0.019266 0.093954 0.250160
1)generate a sub-dataset as trainning set (n=454)
2)use metabolism pathway related geneset(554) as features and train lasso regression model for each metabolite
3)validation in another Cell line samples cohort.
#model training and testing
load(file="dat/CLsample_454_metabolites&rna.RData")
load(file="model/training_set.RData")
library(glmnet)
RMSE = function(y_predicted,y){sqrt(mean((y - y_predicted)^2))}
R2=function(y_predicted,y){
round(1 - sum((y_predicted - y)^2) / sum((y - mean(y))^2),3)
}
rsqs <- NULL
rsqs_test <- NULL
rmses <-NULL
rmses_test <- NULL
d<-c("metabolite","TrainingSet_R2","TestingSet_R2","TrainingSet_RMSE","TestingSet_RMSE")
seed=1007
##select metabolism pathway geneset
#SMPDB
#p_gene<-as.data.frame(read.table("dat/pathway_gene_list.txt",sep="\t",check.names = FALSE,row.names=1,header=F,stringsAsFactors=F))
#Reactome
p_gene<-as.data.frame(read.table("dat/DB_pw_protein_RNA.list",sep="\t",check.names = FALSE,row.names=1,header=F,stringsAsFactors=F))
x=as.matrix(dat_s_train[,colnames(dat_s_train) %in% rownames(p_gene)])
x_t=as.matrix(dat_s_test[,colnames(dat_s_test) %in% rownames(p_gene)])
dim(x)
dim(x_t)
for (i in 1:ncol(dat_metab)){
#y_name="1-methylnicotinamide"
y_name=colnames(dat_metab)[i]
y_name_r=gsub("/", "-", y_name)
##generate y
y=dat_s_train[row.names(x),y_name] #make sure that y and x are in the same order
dat_lasso=cbind(y,x)
lambdas <- 10^seq(2, -2, by = -.1)
fit = glmnet(x,y,alpha = 1,family = "gaussian",standardize=TRUE)
cv.fit <- cv.glmnet(x=data.matrix(dat_lasso[,-1]),y=data.matrix(dat_lasso[,1]),alpha = 1,family = 'gaussian',standardize=TRUE,grouped=FALSE,nfolds = 10,lambda = lambdas)
#plot(cv.fit)
#coef(cv.fit,s = "lambda.min")
##check trainning set performance
y_predicted <- predict(cv.fit,s=cv.fit$lambda.1se,newx=data.matrix(dat_lasso[,-1]))
##evaluate performance
# Sum of Squares Total and Error
rsq <- R2(y_predicted,y)
rsqs<-append(rsqs,rsq)
rmse <- RMSE(y_predicted,y)
rmses<-append(rmses,rmse)
#rsq
#select features
tmp_coeffs <- coef(cv.fit, s = "lambda.1se")
##output coef as matrix
output_coef=data.frame(name = tmp_coeffs@Dimnames[[1]][tmp_coeffs@i + 1], coefficient = tmp_coeffs@x)
row.names(output_coef)=output_coef$name
select.varialbes = tmp_coeffs@Dimnames[[1]][tmp_coeffs@i + 1]
#length(select.varialbes)
select.v=output_coef[select.varialbes,]
select.v=select.v[order(select.v[,2],decreasing=TRUE),]
#select.v
y_name_r=paste(y_name_r,rsq,sep = "_", collapse = NULL)
##check performance in testing set
y=dat_s_test[row.names(x_t),y_name]
dat_lasso_test=cbind(y,x_t)
y_predicted <- predict(cv.fit,s=cv.fit$lambda.1se,newx=dat_lasso_test[,-1])
# Sum of Squares Total and Error
rsqt <- R2(y_predicted,y)
rsqs_test<-append(rsqs_test,rsqt)
rmset <- RMSE(y_predicted,y)
rmses_test<-append(rmses_test,rmset)
#rsq
re=c(y_name,rsq,rsqt,rmse,rmset)
d<-rbind(d,re)
y_name_r=paste(y_name_r,rsqt,sep = "_test_", collapse = NULL)
y_name
write.csv(select.v,file = paste('model-pw-DB/',y_name_r,'_lasso.csv',sep=""),quote=F,row.names=F)
}
summary(rsqs)
##output Table1
colnames(d)=d[1,]
rownames(d)=d[,1]
d=d[-1,-1]
d=as.data.frame(d[order(d[,2],decreasing=TRUE),])
d$metabolite=row.names(d)
write.table(d,file="doc/Table2-2_pathway_model_performance.txt",quote=F,row.names=T)
Min. 1st Qu. Median Mean 3rd Qu. Max. 0.00000 0.00000 0.00000 0.07122 0.10000 0.72300
#dd<-as.data.frame(read.table("doc/Table2-2_pathway_model_performance.txt",sep=" ",check.names = FALSE,header=T,row.names=1,stringsAsFactors=F))
dd=d
dd$TrainingSet_R2=as.numeric(as.character(dd$TrainingSet_R2))
dd$TestingSet_R2=as.numeric(as.character(dd$TestingSet_R2))
dd=dd[order(dd$TrainingSet_R2,decreasing=T),]
dd$index=c(1:225)
head(dd)
library(ggrepel)
p=ggplot(dd) +
geom_point(aes(index,TrainingSet_R2), color = 'black') +
geom_text_repel(aes(index,TrainingSet_R2, label = metabolite),color = 'red',size=8) +
theme_classic(base_size = 30)
p
pdf(file="Fig2f2.pdf")
p
dev.off()
| TrainingSet_R2 | TestingSet_R2 | TrainingSet_RMSE | TestingSet_RMSE | metabolite | index | |
|---|---|---|---|---|---|---|
| <dbl> | <dbl> | <fct> | <fct> | <chr> | <int> | |
| 1-methylnicotinamide | 0.723 | 0.663 | 0.661494676112625 | 0.705085748283592 | 1-methylnicotinamide | 1 |
| 2-deoxycytidine | 0.552 | 0.345 | 0.442463347054229 | 0.522617372532699 | 2-deoxycytidine | 2 |
| alpha-glycerophosphocholine | 0.494 | 0.320 | 0.360618622800324 | 0.411846652835415 | alpha-glycerophosphocholine | 3 |
| phosphocreatine | 0.468 | 0.444 | 0.470184907986689 | 0.466828269533038 | phosphocreatine | 4 |
| inositol | 0.456 | 0.208 | 0.21967424478119 | 0.268037324884284 | inositol | 5 |
| thymidine | 0.425 | 0.475 | 0.406988997871202 | 0.368816969690478 | thymidine | 6 |
Warning message: “ggrepel: 216 unlabeled data points (too many overlaps). Consider increasing max.overlaps” Warning message: “ggrepel: 216 unlabeled data points (too many overlaps). Consider increasing max.overlaps”
xanthine -> xanthosine
library(glmnet)
options(scipen = 200)
load(file="dat/CLsample_454_metabolites&rna.RData")
load(file="model/training_set.RData")
#y_name="xanthine"
#y_name="1-methylnicotinamide"
#y_name="phosphocreatine"
y_name="thymidine"
y_name_r=gsub("/", "-", y_name)
##generate x matrix
#get selected gene set
metab_file = paste('model/lm_metab_RNA_univariant/',y_name_r,'_rna_univariant_model.csv',sep="")
tmp<-as.data.frame(read.table(metab_file,sep=",",check.names = FALSE,header=T,stringsAsFactors=F))
#selected gene with R2 > Q3
cutoff = quantile(tmp[,"adjust_R2"],0.9)[[1]] #top 10% gene selected
tmp=subset(tmp,adjust_R2>=cutoff&pvalue<0.05) #protential significant gene
#extract geneset
sel_gene=unique(tmp$Gene_symbol)
x=dat_s_train[,colnames(dat_s_train) %in% sel_gene]
#x2=dat_s_train[,"xanthosine"]
#x2=dat_s_train[,"niacinamide"] #c("niacinamide","5-adenosylhomocysteine")
#x2=dat_s_train[,"creatine"]
#x2=dat_s_train[,"thymine"]
#x=as.matrix(cbind(x2,x))
y=dat_s_train[row.names(x),y_name] #make sure that y and x are in the same order
dat_lasso=cbind(y,x)
lambdas <- 10^seq(2, -2, by = -.1)
fit = glmnet(x,y,alpha = 1,family = "gaussian",standardize=TRUE)
cv.fit <- cv.glmnet(x=data.matrix(dat_lasso[,-1]),y=data.matrix(dat_lasso[,1]),alpha = 1,family = 'gaussian',standardize=TRUE,grouped=FALSE,nfolds = 5,lambda = lambdas)
plot(cv.fit)
##check trainning set performance
y_predicted <- predict(cv.fit,s=cv.fit$lambda.1se,newx=data.matrix(dat_lasso[,-1]))
##evaluate performance
# Sum of Squares Total and Error
sst <- sum((y - mean(y))^2)
sse <- sum((y - y_predicted)^2)
# R squared
rsq <- round(1 - sse / sst,3)
rsq
#select features
tmp_coeffs <- coef(cv.fit, s = "lambda.1se")
##output coef as matrix
output_coef=data.frame(name = tmp_coeffs@Dimnames[[1]][tmp_coeffs@i + 1], coefficient = tmp_coeffs@x)
row.names(output_coef)=output_coef$name
select.varialbes = tmp_coeffs@Dimnames[[1]][tmp_coeffs@i + 1]
#length(select.varialbes)
select.v=output_coef[select.varialbes,]
select.v=select.v[order(select.v[,2],decreasing=TRUE),]
head(select.v)
##check performance in testing set
x=dat_s_test[,colnames(dat_s_test) %in% sel_gene]
#x2=dat_s_test[,"xanthosine"]
#x2=dat_s_test[,"niacinamide"]
#x2=dat_s_test[,"creatine"]
#x2=dat_s_test[,"thymine"]
#x=as.matrix(cbind(x2,x))
y=dat_s_test[row.names(x),y_name]
dat_lasso_test=cbind(y,x)
y_predicted <- predict(cv.fit,s=cv.fit$lambda.1se,newx=as.matrix(dat_lasso_test[,-1]))
# Sum of Squares Total and Error
sst <- sum((y - mean(y))^2)
sse <- sum((y_predicted - y)^2)
# R squared
rsqt <- round(1 - sse / sst,3)
rsqt
| name | coefficient | |
|---|---|---|
| <fct> | <dbl> | |
| (Intercept) | (Intercept) | 3.97341 |
| DCTD | DCTD | 0.35139 |
| C1orf122 | C1orf122 | 0.18229 |
| SAMHD1 | SAMHD1 | 0.15078 |
| ATP6V1D | ATP6V1D | 0.14618 |
| STIM2 | STIM2 | 0.10846 |
#gene-based MNA prediction LASSO models
library(glmnet)
options(scipen = 200)
load(file="dat/CLsample_454_metabolites&rna.RData")
load(file="model/training_set.RData")
y_name="1-methylnicotinamide"
#get selected gene set
metab_file = paste('model/lm_metab_RNA_univariant/',y_name,'_rna_univariant_model.csv',sep="")
tmp<-as.data.frame(read.table(metab_file,sep=",",check.names = FALSE,header=T,stringsAsFactors=F))
#selected gene with R2 > Q3
cutoff = quantile(tmp[,"adjust_R2"],0.9)[[1]] #top 10% gene selected
tmp=subset(tmp,adjust_R2>=cutoff&pvalue<0.05) #protential significant gene
#extract geneset
sel_gene=unique(tmp$Gene_symbol)
x=dat_s_train[,colnames(dat_s_train) %in% sel_gene]
y=dat_s_train[row.names(x),y_name] #make sure that y and x are in the same order
dat_lasso=cbind(y,x)
lambdas <- 10^seq(2, -2, by = -.1)
fit = glmnet(x,y,alpha = 1,family = "gaussian",standardize=TRUE)
cv.fit <- cv.glmnet(x=data.matrix(dat_lasso[,-1]),y=data.matrix(dat_lasso[,1]),alpha = 1,family = 'gaussian',standardize=TRUE,grouped=FALSE,nfolds = 5,lambda = lambdas)
plot(cv.fit)
##check trainning set performance
y_predicted <- predict(cv.fit,s=cv.fit$lambda.1se,newx=data.matrix(dat_lasso[,-1]))
##evaluate performance
# Sum of Squares Total and Error
sst <- sum((y - mean(y))^2)
sse <- sum((y - y_predicted)^2)
# R squared
rsq <- round(1 - sse / sst,3)
rsq
#plot features
tmp_coeffs <- coef(cv.fit, s = "lambda.1se")
##output coef as matrix
output_coef=data.frame(name = tmp_coeffs@Dimnames[[1]][tmp_coeffs@i + 1], coefficient = tmp_coeffs@x)
row.names(output_coef)=output_coef$name
p=ggplot(output_coef[-1,],aes(reorder(name,coefficient),coefficient)) + geom_point(size=2, color='red')+ coord_flip()+ theme_bw() +
labs(x='Features',y='LASSO coefficient')
pdf(file="Fig E4.pdf")
plot(cv.fit)
dev.off()
#proteomics-based MNA prediction LASSO models
library(glmnet)
options(scipen = 200)
load(file="dat/CLsample_454_metabolites&rna.RData")
load(file="model-proteomic/training_set.RData")
y_name="1-methylnicotinamide"
#get selected gene set
metab_file = paste('model-proteomic/lm_metab_p_univariant/',y_name,'_protein_univariant_model.csv',sep="")
tmp<-as.data.frame(read.table(metab_file,sep=",",check.names = FALSE,header=T,stringsAsFactors=F))
#selected gene with R2 > Q3
cutoff = quantile(tmp[,"adjust_R2"],0.9)[[1]] #top 10% gene selected
tmp=subset(tmp,adjust_R2>=cutoff&pvalue<0.05) #protential significant gene
#extract geneset
sel_gene=unique(tmp$Gene_symbol)
x=dat_s_train[,colnames(dat_s_train) %in% sel_gene]
y=dat_s_train[row.names(x),y_name] #make sure that y and x are in the same order
dat_lasso=cbind(y,x)
lambdas <- 10^seq(2, -2, by = -.1)
fit = glmnet(x,y,alpha = 1,family = "gaussian",standardize=TRUE)
cv.fit <- cv.glmnet(x=data.matrix(dat_lasso[,-1]),y=data.matrix(dat_lasso[,1]),alpha = 1,family = 'gaussian',standardize=TRUE,grouped=FALSE,nfolds = 5,lambda = lambdas)
plot(cv.fit)
##check trainning set performance
y_predicted <- predict(cv.fit,s=cv.fit$lambda.1se,newx=data.matrix(dat_lasso[,-1]))
##evaluate performance
# Sum of Squares Total and Error
sst <- sum((y - mean(y))^2)
sse <- sum((y - y_predicted)^2)
# R squared
rsq <- round(1 - sse / sst,3)
rsq
#plot features
tmp_coeffs <- coef(cv.fit, s = "lambda.1se")
##output coef as matrix
output_coef=data.frame(name = tmp_coeffs@Dimnames[[1]][tmp_coeffs@i + 1], coefficient = tmp_coeffs@x)
row.names(output_coef)=output_coef$name
p=ggplot(output_coef[-1,],aes(reorder(name,coefficient),coefficient)) + geom_point(size=2, color='red')+ coord_flip()+ theme_bw() +
labs(x='Features',y='LASSO coefficient')
p
pdf(file="Fig E5.pdf")
plot(cv.fit)
dev.off()
model validation
library(ggfortify)
p=autoplot(prcomp(dat_all[,-(1:length(target_features))]),data=dat_all,colour='SampleType',na.action=na.omit,size=1,label=FALSE,label.size=1,center = TRUE, scale = TRUE)
p=p+theme_bw()+theme(panel.grid.major=element_blank(),panel.grid.minor=element_blank(),axis.text=element_text(size=20),axis.title=element_text(size=20))
p
pdf(file="Fig3e.pdf")
p
dev.off()
#read in metabolism data
#dat_BRCA_all<-as.data.frame(read.table("dat/BRCA_2HGcohort_MNA_validation.csv",sep=",",check.names = FALSE,header=T,row.names=1,stringsAsFactors=F))
table(dat_BRCA_all$TISSUE_TYPE)
#normal distribution vs tumor distribution
library(dplyr)
library(ggplot2)
tmp=subset(dat_BRCA_all[,c(1:3)],TISSUE_TYPE=="POS TUMOR" | TISSUE_TYPE=="NEG TUMOR" )
tmp$group="Tumor"
tmp2=subset(dat_BRCA_all[,c(1:3)],TISSUE_TYPE=="POS NORMAL" | TISSUE_TYPE=="NEG NORMAL" )
tmp2$group="Normal"
p=as.data.frame(rbind(tmp,tmp2))
p=ggplot(p,aes(group,log_MNA,fill=group)) +geom_violin(trim=FALSE) +geom_boxplot(width=0.2)+geom_jitter(size=0.8, alpha=0.9)
p=p+theme_bw()+theme(panel.grid.major=element_blank(),panel.grid.minor=element_blank(),axis.text=element_text(size=17),axis.title=element_text(size=17))
p
pdf(file="Fig3a.pdf")
p
dev.off()
#lm plot
dat_BRCA<-subset(dat_BRCA_all,TISSUE_TYPE=="POS TUMOR" | TISSUE_TYPE=="NEG TUMOR" )
dim(dat_BRCA)
head(dat_BRCA)
#####################################################
## most significant feature lm regression model check
#####################################################
library(ggplot2)
library(dplyr)
options(scipen = 200)
options(digits=5)
y=dat_BRCA[,"log_MNA"]
x=dat_BRCA[,"NNMT"]
#head(x)
fit=lm(y~x)
summary(fit)
tmp=as.data.frame(cbind(y,x))
p=ggplot(tmp,aes(x,y))
p=p+stat_cor(data=tmp, method = "pearson")+geom_smooth(method = lm)+geom_point()+theme_bw()+theme(panel.grid.major=element_blank(),panel.grid.minor=element_blank(),axis.text=element_text(size=20),axis.title=element_text(size=20))
p
pdf(file="Fig3b.pdf")
p
dev.off()
######################################################
## metabolit(MNA) prediction lasso model re-train
######################################################
# check converge or not
library(glmnet)
y_name="log_MNA"
y=dat_BRCA[,y_name]
x=as.matrix(dat_BRCA[,-c(1,2,3)])
lambdas <- 10^seq(2, -2, by = -.1)
##fit = glmnet(x,y,alpha = 1,family = "gaussian",standardize=TRUE)
##print(fit)
cv.fit <- cv.glmnet(x,y,alpha = 1,family = 'gaussian',standardize=TRUE,grouped=FALSE,nfolds = 3,lambda = lambdas)
plot(cv.fit)
y_predicted <- predict(cv.fit,s=cv.fit$lambda.1se,newx=x)
# Sum of Squares Total and Error
sst <- sum((y - mean(y))^2)
sse <- sum((y_predicted - y)^2)
# R squared
rsq <- round(1 - sse / sst,3)
rsq
#output select features
tmp_coeffs <- coef(cv.fit, s = "lambda.1se")
##output coef as matrix
output_coef=data.frame(features = tmp_coeffs@Dimnames[[1]][tmp_coeffs@i + 1], coefficient = tmp_coeffs@x)
#row.names(output_coef)=output_coef$features
output_coef<-output_coef[order(output_coef[,"coefficient"],decreasing=TRUE),]
output_coef
NEG NORMAL NEG TUMOR POS NORMAL POS TUMOR
22 29 20 31
| TISSUE_TYPE | 1-methylnicotinamide | log_MNA | A1BG | A1CF | A2M | A2ML1 | A3GALT2 | A4GALT | A4GNT | ⋯ | ZWILCH | ZWINT | ZXDA | ZXDB | ZXDC | ZYG11A | ZYG11B | ZYX | ZZEF1 | ZZZ3 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| <chr> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | ⋯ | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | <dbl> | |
| 10249 | POS TUMOR | 109820 | 5.0407 | 7.0970 | 5.3529 | 10.5500 | 5.1856 | 5.9122 | 7.7975 | 4.3078 | ⋯ | 7.3816 | 8.2418 | 8.7707 | 8.6037 | 15.693 | 6.4428 | 8.0481 | 8.8707 | 8.0087 | 8.7031 |
| 10669 | POS TUMOR | 185000 | 5.2672 | 7.0685 | 5.2787 | 11.0912 | 5.3508 | 5.8958 | 7.2231 | 4.5214 | ⋯ | 7.3846 | 7.6368 | 8.7588 | 8.0574 | 15.521 | 7.6160 | 8.0859 | 9.6428 | 8.0782 | 7.9184 |
| 10693 | NEG TUMOR | 193026 | 5.2856 | 6.7969 | 5.4629 | 10.5119 | 5.5247 | 5.3591 | 6.6529 | 4.2828 | ⋯ | 8.5575 | 7.6585 | 8.5116 | 7.9163 | 14.701 | 6.9236 | 8.1599 | 8.8320 | 8.2800 | 8.6087 |
| 10741 | NEG TUMOR | 129716 | 5.1130 | 7.3220 | 5.3056 | 9.7633 | 5.2688 | 5.6986 | 6.5950 | 4.6560 | ⋯ | 8.5898 | 8.1199 | 8.6687 | 8.1055 | 15.894 | 6.9505 | 8.4229 | 9.1537 | 7.7177 | 9.1226 |
| 10745 | POS TUMOR | 182188 | 5.2605 | 7.0808 | 5.1813 | 10.8059 | 5.1637 | 5.7149 | 7.0794 | 4.4560 | ⋯ | 8.2665 | 8.0113 | 8.8256 | 8.3101 | 14.885 | 5.5139 | 8.3459 | 9.0524 | 8.4127 | 8.6725 |
| 10863 | POS TUMOR | 425704 | 5.6291 | 7.0691 | 5.1651 | 11.7046 | 5.3249 | 5.4034 | 7.0755 | 4.3897 | ⋯ | 7.7129 | 6.9534 | 8.7615 | 8.0995 | 14.943 | 5.4639 | 8.6473 | 10.3159 | 8.7710 | 8.6220 |
Call:
lm(formula = y ~ x)
Residuals:
Min 1Q Median 3Q Max
-0.7567 -0.1660 0.0117 0.1742 0.7727
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 4.7507 0.5180 9.17 0.00000000000069 ***
x 0.0385 0.0553 0.70 0.49
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 0.309 on 58 degrees of freedom
Multiple R-squared: 0.00827, Adjusted R-squared: -0.00883
F-statistic: 0.484 on 1 and 58 DF, p-value: 0.49
`geom_smooth()` using formula 'y ~ x'
`geom_smooth()` using formula 'y ~ x'
| features | coefficient | |
|---|---|---|
| <fct> | <dbl> | |
| 1 | (Intercept) | 5.1099 |
sample cancer purity check
########################################
## bulk tissue samples cancer purity check
########################################
load(file="dat/CLsample_454_metabolites&rna.RData")
dat_e=t(dat_BRCA_all[,-c(1,2,3)])
dim(dat_e)
library(estimate)
library(ggplot2)
library(ggridges)
estimate_fun <- function(dat,pro){
input.f=paste0(pro,'_estimate_input.txt')
output.f=paste0(pro,'_estimate_gene.gct')
output.ds=paste0(pro,'_estimate_score.gct')
write.table(dat,file = input.f,sep = '\t',quote = F)
filterCommonGenes(input.f=input.f,
output.f=output.f ,
id="GeneSymbol")
estimateScore(input.ds = output.f,
output.ds=output.ds,
platform="affymetrix")
scores=read.table(output.ds,skip = 2,header = T)
rownames(scores)=scores[,1]
scores=t(scores[,3:ncol(scores)])
return(scores)
}
scores=as.data.frame(estimate_fun(dat_e,"BRCA")) #estimate_fun(data,prefix)
cancer_purity=scores
cancer_purity$dataset="Breast bulk samples"
########################################
## Cell Line samples cancer purity check
########################################
dat_e=t(dat_rna)
dim(dat_e)
scores_ccle=as.data.frame(estimate_fun(dat_e,"CCLE")) #estimate_fun(data,prefix)
scores_ccle$dataset="CCLE Cell Line"
cancer_purity=rbind(cancer_purity,scores_ccle)
head(cancer_purity)
##########################################
#plot
#########################################
#plot(density(scores$TumorPurity), col="blue",xlim=c(0,1),ylim=c(0,37))
#par(new=TRUE)
#plot(density(scores_ccle$TumorPurity), col="orange",xlim=c(0,1),,ylim=c(0,37))
#plot
p=ggplot(cancer_purity, aes(x = TumorPurity, y = dataset)) + geom_density_ridges()
p=p+theme_bw()+theme(panel.grid.major=element_blank(),panel.grid.minor=element_blank(),axis.text=element_text(size=17),axis.title=element_text(size=17))
p
pdf(file="Fig3c.pdf")
p
dev.off()
[1] "Merged dataset includes 10173 genes (239 mismatched)." [1] "1 gene set: StromalSignature overlap= 138" [1] "2 gene set: ImmuneSignature overlap= 139"
[1] "Merged dataset includes 7834 genes (2578 mismatched)." [1] "1 gene set: StromalSignature overlap= 62" [1] "2 gene set: ImmuneSignature overlap= 102"
| StromalScore | ImmuneScore | ESTIMATEScore | TumorPurity | dataset | |
|---|---|---|---|---|---|
| <dbl> | <dbl> | <dbl> | <dbl> | <chr> | |
| X10248 | 1328.05 | 880.76 | 2208.814 | 0.59846 | Breast bulk samples |
| X10249 | -300.71 | 335.58 | 34.867 | 0.81959 | Breast bulk samples |
| X10668 | 1155.52 | 1025.05 | 2180.574 | 0.60178 | Breast bulk samples |
| X10669 | 970.15 | 1206.09 | 2176.244 | 0.60229 | Breast bulk samples |
| X10693 | -340.00 | 2716.17 | 2376.173 | 0.57860 | Breast bulk samples |
| X10740 | 794.78 | 620.64 | 1415.411 | 0.68750 | Breast bulk samples |
Picking joint bandwidth of 0.0247 Picking joint bandwidth of 0.0247
##get all CCLE metabolism data
dat_allm<-merge(anno,dat_metab,by="row.names")
row.names(dat_allm) <- dat_allm[,1]
dat_all<-dat_allm[,-1]
#merge with metabolites data and gain 454 shared samples
dat_all=merge(dat_allm,dat_rna,by="row.names")
row.names(dat_all) <- dat_all[,1]
dat_all<-dat_all[,-c(1,2)]
dim(dat_all)
#head(dat_all)
## different cell type may have different metabolism pettern
library(ggfortify)
p=autoplot(prcomp(dat_all[,-(1:length(target_features))]),data=dat_all,colour='SampleType',na.action=na.omit,size=1,label=FALSE,label.size=1,center = TRUE, scale = TRUE)
p=p+theme_bw()+theme(panel.grid.major=element_blank(),panel.grid.minor=element_blank(),axis.text=element_text(size=20),axis.title=element_text(size=20))
p
#pdf(file="Fig3e.pdf")
#p
#dev.off()
## linear relationship between NNMT and MNA in two cell type
library(ggpubr)
p=dat_all[,c("1-methylnicotinamide","NNMT","SampleType","growth_properties")]
colnames(p)[1]="MNA"
#p=p[p[,"SampleType"]=="tissue_cell",]
dim(p)
q=ggplot(p,aes(x=NNMT,y=MNA,colour=SampleType))
q=q+theme_bw()+stat_cor(data=p, method = "pearson")+geom_smooth(method = lm)+geom_point()+theme(panel.grid.major=element_blank(),panel.grid.minor=element_blank(),axis.text=element_text(size=20),axis.title=element_text(size=20))
q
pdf(file="Fig3d.pdf")
q
dev.off()
Error in merge(anno, dat_metab, by = "row.names"): object 'anno' not found Traceback: 1. merge(anno, dat_metab, by = "row.names")